Sequence
atgc intronic sequence ATGC exonic sequenceGTCCTGATCAGTGCAATTCTGCAAATGCAATATTCTGCTCATGGATGGCTGTTGGGAATATTCTTGGTTTTTCAGCTGGAGCGAGTGGGGAATGGCACAAgtatgccttattatttgctctcttttgtgcttggcataaacatgactacggttcagcagttgacgttcactttaagatagtcattatacatttgatttaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G145107_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g58080.1 (Oryza sativa), 5'ss of exon 7
GTCCTGATCAGTGCAATTCTGCAAATGCAATATTCTGCTCATGGATGGCTGTTGGGAATATTCTTGGTTTTTCAGCTGGAGCGAGTGGGGAATGGCACAAgtatgccttattatttgctctcttttgtgcttggcataaacatga---ctacggttcagcagttgacgttcactttaagatagtcattatacatttgatttaa
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GTCCTGATCAGTGTAATTCTGCAAATGCAATTTTTTGCACATGGATGGCTGTTGGAAACGTTCTTGGTTTTTCATCTGGTGCTAGTGGGAATTGGCACAAgtacgtact-tcatgtgtcct-ttatgtgctta-tgtttacttgaagtttgttgctcataagtttgcgctgtcctatacatgctactgttggtaaagggttga
upper sequence: GRMZM2G145107_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT2G02860.2 (Arabidopsis thaliana), 5'ss of exon 7
GTCCTGATCAGTGCAATTCTGCAAATGCAATATTCTGCTCATGGATGGCTGTTGGGAATATTCTTGGTTTTTCAGCTGGAGCGAGTGGGGAATGGCACAAgtatgccttattat--ttgctctc----ttttgtgcttggcataaacatgactacggttcagcagttgacgttcactttaagatagtcattatacatttgatttaa--
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GTCCTGATCAGCGGAATACTGCAAATGCTGTGTTCTGCTTGTGGATGGCTATTGGGAACATCCTTGGGTTTTCTGCCGGTGCTAGCGGAAAATGGCAAGAgtaatctttgagatccttattctcaaaatcttgtattctttttcctcat--ttgcaattttgcattttccgccagctgttaaatgatcag-gcaattttactgcgcag
upper sequence: GRMZM2G145107_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv01s0026g01960.t01 (Vitis vinifera), 5'ss of exon 7
GTCCTGATCAGTGCAATTCTGCAAATGCAATATTCTGCTCATGGATGGCTGTTGGGAATATTCTTGGTTTTTCAGCTGGAGCGAGTGGGGAATGGCACAAgtatgccttattatttgctctcttttgtgcttggcataaacatgactacggttcagcagttgacgttcactttaagatagtcat-tatacatttgatttaa-----
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GTCCTGATCAGCGAAATTCAGCAAATGCCATCTTTTGCTCATGGATGGCTGTGGGAAACATTCTAGGATTTTCTGCTGGTGCTAGTGGACACTGGCATAGgtgaaacttcttg--agcacaattttgt-ctagatataag---ggttaaggactcaaaatttttatgtgccagccagttttgatgtacttatgtgcttagacattcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19855127|gb|BQ060179.1|BQ060179EST: GTTGGGAATATTCTTGGTTTTTCAGCTGGAGCGAGTGGGGAATGGCACAA GTGGTTTCCATTTCTAACGACAAGAGCGTGCTGTGAAGCTTGCGGTAATTT
genomic: GTTGGGAATATTCTTGGTTTTTCAGCTGGAGCGAGTGGGGAATGGCACAAgtatgcctta ... gtttgtgcagGTGGTTTCCATTTCTAACGACAAGAGCATGCTGTGAAGCTTGCGGTAATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCTGATCAGTGCAATTCTGCAAATGCAATATTCTGCTCATGGATGGCTGTTGGGAATATTCTTGGTTTTTCAGCTGGAGCGAGTGGGGAATGGCACAAgtatgccttattatttgctctcttttgtgcttggcataaacatgactacggttcagcagttgacgttcactttaagatagtcattatacatttgatttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA