1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacgccactgctcactagactttttggtggcgcgcctttgccgcatttttcattaatataaggagaatcttgtttttttggggggatgcag
species | Zea mays |
transcript | GRMZM2G143602_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|33103216|gb|CF063176.1|CF063176
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|60396112|gb|DN228981.1|DN228981
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|4680837|gb|AI629507.1|AI629507
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: GTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|71770652|gb|DR968589.1|DR968589
genomic: GTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|16377160|gb|BI991802.1|BI991802
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|60395786|gb|DN228656.1|DN228656
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|60343609|gb|DN210582.1|DN210582
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|21389960|gb|BQ528009.1|BQ528009
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCEST: gi|29576767|gb|CB616879.1|CB616879
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCC
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|20507674|gb|BQ279724.1|BQ279724
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATEST: gi|60340369|gb|DN207342.1|DN207342
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGAT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|211466861|gb|FL187159.1|FL187159
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCCTGGT-AAAGTTTATGAACGCAGATAACCAGCACCEST: gi|78073838|gb|DV502272.1|DV502272
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCC-TGGTTAAAGTTTATGAACGCAGATAACCAGCACC
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTEST: gi|60395745|gb|DN228615.1|DN228615
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAATGCAGATAACCAGCACCTEST: gi|16379175|gb|BI992806.1|BI992806
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
EST: ACCAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacgccactgctcactagactttttggtggcgcgcctttgccgcatttttcattaatataaggagaatcttgtttttttggggggatgcag
- - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG