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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgttgctttctctgctgtgcggtttagttaaacttgtatgcattgtcttgttagctttacatgctatggtgttag

Basic information

species Zea mays
transcript GRMZM2G133308_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133308_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g08360.1 (Oryza sativa), 5'ss of exon 7
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgttg-ctttctctgctgtgc--ggtttagttaaacttgtatgcattgtcttgtta-gctttacatgcta-tggtgttag------------
||||||||||||||| ||||| | ||||| | |||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| ||||| ||||||| | |||||   || ||  | |||  ||| || |      |   |    | | | || || || |  | |  |||             
ACTACCAGATGAATTAGATCCCATTGGGAAACTTCCAGGATCATTTGATGATGGGGATCCACAAACCACGAACTTATATGTTGGGAATCTTTCTCCTAAGgttggcattctccaatgcgcttgttttgtttatacataaggttaactttacatcatgattaacttgatggttgcattatattatatgacag

upper sequence: GRMZM2G133308_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G34030.2 (Glycine max), 5'ss of exon 7
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgtt-----gctttctctgctgtgcggtttagttaaactt--gtatgcattgtcttgttagctttacat-gctatggtgttag------
 || || ||||| ||||| || | ||| | | |||||||||||||||||||||||||||||||||| || ||  | |||||||| ||||| || |||||||||     |    |||        || || |||   |||  | |   |  | | ||||||  | || | |  |   | |||       
GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgttagagtgtcccctcaataaatgggctttgttgttctttgggaattaaggacatgttagtctcaccttggcagttttttaattgtag

upper sequence: GRMZM2G133308_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G15820.1 (Glycine max), 5'ss of exon 3
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgt-----tgctttctctgctgtgcggtttagttaaacttgtatgcatt---gtcttgttagcttta-cat-gctatggtgttag-----
 || || ||||| ||||| || | ||| | | |||||||||||||||||||||||||||||||||| || ||  | |||||||| ||||| || ||||||||     ||    |||    |   |  || |||   ||| |  | |||   |   ||||||  | | ||| ||  |  ||| |      
GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgtcagagtgtcccctcaatagatggactttgttgttctt-tgagaattaaggagatgttagtctcatcatcgcagttttgtaattgtag

upper sequence: GRMZM2G133308_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgttgctttctctgctgtgcggtttagttaaacttgtatgcattgtcttgttagctttacatgctatggtgttag------------------------------------
 || || ||||| |||||||||| ||| |   |||| ||||||||||||||||||||||| ||||| || ||  | |||||||| ||||| || ||  ||||||| |||     | |  | |   | | || |       ||| | ||  |   || |    || |||   |                                      
GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggat---gctcaattctctgttattcttttactc-tttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211283976|gb|FL373345.1|FL373345
EST:     ATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAG                         GNCGATGAGAATTTTCTTTTGAGGACATTTGGTCGGTTTGGACCTATTGCT
genomic: ATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgttgctttct ... atggtgttagGTCGATGAGAATTTTCTTTTGAGGACATTTGGTCGGTTTGGACCTATTGCT