1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCCCTATTGGCATTGTTACTGCAATTGCTGCTCCTGCAAGTCTTAAGGTGGACTTTGAAGGGAATGGCGGTCATGCTGGAGCAGTGCTGATGCCTGCAAGgttagcatattctttcatttttattgcgatttacatttgtgtgaaggatctccacaaatatttatgtagaaggagtgttctacag
species | Zea mays |
transcript | GRMZM2G130034_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACTTTGAAGGGAATGGCGGTCATGCTGGAGCAGTGCTGATGCCCTGCA-G AAATGATGCTGGACTGEST: gi|31359313|gb|CD443670.1|CD443670
genomic: ACTTTGAAGGGAATGGCGGTCATGCTGGAGCAGTGCTGATGCC-TGCAAGgttagcatat ... tgttctacagAAATGATGCTGGACTG
EST: GACTTTGAAGGGAATGGCGGTCATGCTGGAGCAGTGCTGATGCCTGCAAG AAATGATGCTGGACTGGCAGCAGCTGAATTAGCATTAGCAGTCGAGAAACAEST: gi|148940595|gb|EC885401.2|EC885401
genomic: GACTTTGAAGGGAATGGCGGTCATGCTGGAGCAGTGCTGATGCCTGCAAGgttagcatat ... tgttctacagAAATGATGCTGGACTGGCAGCAGCTGAATTAGCATTAGCAGTCGAGAAACA
EST: ACTTTGAAGGGAAATGGCG-TCATGCTGGAGCAGTGCTGATGCCTGCAAG AAATGATGCTGGACTG
genomic: ACTTTGAAGGGAA-TGGCGGTCATGCTGGAGCAGTGCTGATGCCTGCAAGgttagcatat ... tgttctacagAAATGATGCTGGACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCTATTGGCATTGTTACTGCAATTGCTGCTCCTGCAAGTCTTAAGGTGGACTTTGAAGGGAATGGCGGTCATGCTGGAGCAGTGCTGATGCCTGCAAGgttagcatattctttcatttttattgcgatttacatttgtgtgaaggatctccacaaatatttatgtagaaggagtgttctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT