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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAGAATCCACGGCTCACGGAAGCCAGTTTACATACTTCCTCACTGCTCCAATGCAAGCCTTCTGCCAACTAGCGGGAATAACTTCTGACATAGACACTgtatgttatctgtttgaggaattgactattcgttattccctaaaaatatcgtttctatagacgtatttgtgctgcttggttttcag

Basic information

species Zea mays
transcript GRMZM2G115304_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115304_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g29470.1 (Oryza sativa), 5'ss of exon 7
AGTAGAATCCACGGCTCACGGAAGCCAGTTTACATACTTCCTCACTGCTCCAATGCAAGCCTTCTGCCAACTAGCGGGAATAACTTCTGACATAGACACTgtatgttatctgtttgaggaattgactattcgttattccctaaaaatatcg-tttctatagacgtatttgtgctgcttggttttcag
 || |||||||||  | | |||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||| || |||||||||||||||||||  |||||   | |  |||| || | || |||| ||           ||||| | ||||||||     |  | | |||||||||||||||
TGTGGAATCCACGAGTAATGGAAGCCAATTTACGTACTTCCTCACAGCTCCAATGCAAGCCTTCTGCCAATTAGCTGGGATAACTTCTGACATAGACAGCgtatgcactttccttgaagagtcgagtatttgt---------ggaatattgatttctatattttgagctcttctgcttggttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211522667|gb|FL445638.1|FL445638
EST:     CAATGCAAGCCTTCTGCCAACTAGCGGGAATAACTTCTGACATAGACACT                         GATACATACGCAAATGCAGAGAACATACTTTTCTCTGCTTTGGAAGAATAT
genomic: CAATGCAAGCCTTCTGCCAACTAGCGGGAATAACTTCTGACATAGACACTgtatgttatc ... tggttttcagGATACATACGCAAATGCAGAGAACATACTTTTCTCTGCTTTGGAAGAATAT