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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTCTTGGGCTATTAGTACTCGGTTTGTTGGTGGGATTATCATGACCCATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAGgtctcctctccttcctcatttgcttgcctttgtattcacaacattctacctgactaatctagtcttccctcctttgtttcgtgtgctactatcaatcctttacaatgtaataaatggctaactaaaatgtacattgttctgttttcaaatccatacccatgatggggctatctctaagaatgttcctatttaattcag

Basic information

species Zea mays
transcript GRMZM2G107089_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107089_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g07060.1 (Oryza sativa), 5'ss of exon 5
GACCTCTTGGGCTATTAGTACTCGGTTTGTTGGTGGGATTATCATGACCCATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAGgtctcctctccttcctcatttgcttgcctttgtattcacaacattctacctgactaatctagtcttccctcctttgtttcgtgtgctactatcaatcctttacaatgtaataaatggctaactaaaatgtacattgttctgttttcaaatccatacccatgatggggctatctctaagaatgttcctatttaattcag
||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||  |||||||||| ||||  ||||||||||| |||||||  |    | | ||  ||  ||   | |||  |  |    || ||| | |  ||    | |  | ||       |  || |||    ||    ||| | |  |||| |                                                                                       
GACTTCTTGGGCTATTAGCACTCGGTTTGTTGGTGGGATCATCATGACCCATGGTGATGATGCTGGCTTAATGCTTCCGCCAAATATTGCACCCATCCAGgtctttt----tccatcgattaattatatatgtgatttc----ttgtacataaa-aactggggcccctctgtcaaactatgtttgccctgat--gccctctcctttgtatt---------------------------------------------------------------------------------------

upper sequence: GRMZM2G107089_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G24670.1 (Glycine max), 5'ss of exon 7
GACCTCTTGGGCTATTAGTACTCGGTTTGTTGGTGGGATTATCATGACCCATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAGgtctcctctccttcctcatttgcttgcctttgtattcacaacattctacctgactaatctagtcttccctcctttgtttcgtgtgctactatcaatcctttacaatgtaataaatggctaactaaaatgtacattgttctgttttcaaatccatacccatgatggggctatctctaagaatgttcctatttaattcag
||| || ||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||| || ||||||||||| |||| | ||||||| || |||||              ||||||  |||  |||   ||  ||| ||    | |  ||  |   |      |  || | |     ||  | |   ||| |||| ||   |  | |  ||| ||                                                                             
GACATCATGGGCAATTAGTACACGTTTTGTTGGTGGCATCATCATGACACATGGAGATGATGCAGGCCTAATGCTTCCCCCAAAGCTTGCACCGATACAGgta-------------catttggatgctattggtgtctaaaccttg---cggtgtagacccattagttatatttagctgt---tgaaagttggaatactttgcaccttggtca--ggcaaa-----------------------------------------------------------------------------

upper sequence: GRMZM2G107089_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G29890.1 (Glycine max), 5'ss of exon 7
GACCTCTTGGGCTATTAGTACTCGGTTTGTTGGTGGGATTATCATGACCCATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAGgtctcctctccttcc-tcatttgcttgcctttgtattcacaacattctacctgactaatctagtcttccctcctttgtttcgtgtgctactatcaatcctttacaatgtaataaatggctaactaaaatgtacattgttctgttttcaaatccatacccatgatggggctatctctaagaatgttcctatttaattcag
||| || ||||| |||||||| || ||||||||||| || |||||||| ||||| ||||| || || ||||||||||| |||| ||||||||| || |||||    |    | |  |   |  |||  | ||| ||    |       ||   | || |  | | || |         || |  | ||    |   |||||    | | ||                                                                                        
GACATCATGGGCAATTAGTACACGTTTTGTTGGTGGTATCATCATGACACATGGAGATGACGCAGGCCTAATGCTTCCCCCAAAGATTGCACCAATACAGgtacatttggatgctattgatgtcttaaccttg-atgtgtag------acaccattagttaaattttgctgttgaaagttggaatact----ttgctccttggtcaggcaa----------------------------------------------------------------------------------------

upper sequence: GRMZM2G107089_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT5G52520.1 (Arabidopsis thaliana), 5'ss of exon 7
GACCTCTTGGGCTATTAGTACTCGGTTTGTTGGTGGGATTATCATGACCCATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAGgtctcctctccttcctca--tttgcttgcctttgtattcacaacattctacctgactaatctagtcttccctcctttgtttcgtgtgctactatcaat-cctttacaatgtaataaatggct--aactaaaatgtacattgttctgttttcaaatccatacccatgatggggctatctctaagaatgttcctatttaattcag
||| || |||||  | ||||| || ||||||||||| ||||||||||| || || |||||  | ||||| ||||||||||| | ||| || || || ||||| |    | |||   ||  |||  |||| ||  | |  |   |  | | | |  ||||   ||  ||   |     |   || | |||    | | |  |||||  | || || |  | ||  |  |  |||   |  | |||| | ||  ||                                                 
GACATCATGGGCAGTCAGTACACGTTTTGTTGGTGGCATTATCATGACTCACGGAGATGACACTGGTCTCATGCTTCCTCCCAAGATAGCTCCAATACAGgtttatctttcttaagcagttttctttgctttaatctgaagttcgatttgc-tagctaaag-agaatttgttatggggaaacgggagctgtagtgattatctttaggaagtgatgagagacttgagattgaatcctctcttttctttatttgaag------------------------------------------------

upper sequence: GRMZM2G107089_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv16s0050g00960.t01 (Vitis vinifera), 5'ss of exon 7
GACCTCTTGGGCTATTAGTACTCGGTTTGTTGGTGGGATTATCATGACCCATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAGgtctcctctccttcctcatttgcttgcctttgtattcacaacattctacctgactaatctagtcttccctcctttgtttcgtgtgctactatcaatcctttacaatgtaataaatggctaactaaaatgtacattgttctgttttcaa-atccatacccatgatggggctatctctaagaatgttcctatttaattcag
||| || |||||  | || || || ||| ||||||| || |||||||||||||| |||||||| ||| | |||||||| ||||  ||||| || || ||||| |    | ||  || ||  |  ||   ||  || ||    ||  ||| |  | | |  || || | |      |||| |  |  | | ||       ||   |  | |||| |   |   | |  | | |||| || |||| | ||      |     |||      ||| | | |  |  |      ||  | |||
GACATCATGGGCAGTCAGCACCCGTTTTATTGGTGGTATCATCATGACCCATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAGgtattacttactatctgatcag--tgttgttagatccagtttata-tacattccaattagagactgctccaa---gttttgcttcttgccatatggtacttg-gagattataactcattgttttagttctgcatttttttgttcttaatgcttgttgatttgacaattttatattttaacacctattgcatttttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76018748|gb|DT945918.1|DT945918
EST:     ATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAG                         GTCATAATAGTACCAATATGGAAAAAGGGTGATGAGAAGGCTGTTGTTGTG
genomic: ATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAGgtctcctctc ... tttaattcagGTCATAATAGTACCAATATGGAAAAAGGGTGATGAGAAGGCTGTTGTTGTG
EST: gi|60397373|gb|DN230189.1|DN230189
EST:     AGGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAG                         GTCATAATAGTACCAATATGGAAAAAGGGTGATGAGAAGGCTGTTGTTGTG
genomic: ATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAGgtctcctctc ... tttaattcagGTCATAATAGTACCAATATGGAAAAAGGGTGATGAGAAGGCTGTTGTTGTG
EST: gi|6194519|gb|AW146623.1|AW146623
EST:     ATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAG                         GTCATAATAGTACCAATATGGAAAAAGGGTGATGAGAAGGCTGT
genomic: ATGGCGATGATGCCGGTCTAATGCTTCCTCCAAGGATTGCACCCATTCAGgtctcctctc ... tttaattcagGTCATAATAGTACCAATATGGAAAAAGGGTGATGAGAAGGCTGT