1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACGAGCGGCACTCTTCACCACAGCAAGCCCCATCACATGTTGGCAATGGATTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtgttcctgcagatgcgtcctggattcggtagatcctagctgctactttaaagcgcagcccggcctgtgcatcgatttgatcctgtcttcttcttgtgtgtggcatgcatgcatgtttgcag
species | Zea mays |
transcript | GRMZM2G097059_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGG GTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAGEST: gi|84351299|gb|DW245704.1|DW245704
genomic: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtg ... atgtttgcagGTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
EST: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGG GTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAGEST: gi|32833483|gb|CD973161.1|CD973161
genomic: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtg ... atgtttgcagGTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
EST: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGG GTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAGEST: gi|67039080|gb|CO465335.1|CO465335
genomic: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtg ... atgtttgcagGTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
EST: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGG GTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAGEST: gi|78115260|gb|DV533648.1|DV533648
genomic: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtg ... atgtttgcagGTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
EST: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGG GTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAGEST: gi|32839046|gb|CD978727.1|CD978727
genomic: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtg ... atgtttgcagGTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
EST: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGG GTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAGEST: gi|78074567|gb|DV503001.1|DV503001
genomic: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtg ... atgtttgcagGTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
EST: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGG GTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAGEST: gi|67016010|gb|CO444759.1|CO444759
genomic: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtg ... atgtttgcagGTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
EST: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGG GTTCGCTCCCGA-CATATGA-TAACTTCATGCCG-CATGGCTACCCTGAAGEST: gi|87153067|gb|DY397856.1|DY397856
genomic: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtg ... atgtttgcagGTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
EST: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGG GTTCGCTCCCGAGCATATGAATAACTTCATGCCGGCATGGCTACCCTGAAGEST: gi|32847274|gb|CD986955.1|CD986955
genomic: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtg ... atgtttgcagGTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
EST: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGG GTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
genomic: TTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtg ... atgtttgcagGTTCGCTCCCGAGCATATGAATAATTTCATGCCGGCATGGCTACCCTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGAGCGGCACTCTTCACCACAGCAAGCCCCATCACATGTTGGCAATGGATTATTCTTTCATCCCCTGGAAGCTGCAGCAGAGCCAACCCTGCAGATCGGgtatgtcgtgttcctgcagatgcgtcctggattcggtagatcctagctgctactttaaagcgcagcccggcctgtgcatcgatttgatcctgtcttcttcttgtgtgtggcatgcatgcatgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT