Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAAAACCTTTCCCCAAAGGTGGCAGGgtgagcaaatttctgccagtagatcttacagtttatgaatgcttaatttatttcaggttattcagctttgcattaaacaatgaagctacatcagatagat...

Basic information

species Zea mays
transcript GRMZM2G095323_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095323_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g13130.4 (Oryza sativa), 5'ss of exon 8
AATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAAAACCTTTCCCCAAAGGTGGCAGGgtgagcaaatttctgccagtagatcttacagtttatgaatgcttaatttatttcaggttattcagctttgcattaaacaatgaagctacatcagatagat
||||| |||||||||| || |||||||| ||||| ||||  || ||  | |||||||||||||||||||||||||||||  |||| ||  |     | | |    || ||  |    |   ||  | |     |  ||     |  |   |   |   ||| ||| |   || |
AATTTCTCTTGCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGGgtgagagaattcctaacttggaaacctttgattgattcagttatgggtttctcctcacaaaacaaaaaggattctgaactttttgctgcattattgagct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71310796|gb|DR791700.1|DR791700
EST:     GCTCACACTTGCAGTAAGGGAACAAAACCTTTCCCTCAA-GGTGGCCAGG                         AA-CAAACAAACAGG
genomic: GCTCACACTTGCAGTAAGGGAACAAAACCTTTCCC-CAAAGGTGGC-AGGgtgagcaaat ... ttttctgcagAAACAAACAAACAGG
EST: gi|74233328|gb|DT641242.1|DT641242
EST:     ATGCTCACACTTGCAGTAAGGGAACAAAACCTTTCCCCAAAGGTGGCAGG                         AAACAA-CAAACAGGTTATACCTC
genomic: ATGCTCACACTTGCAGTAAGGGAACAAAACCTTTCCCCAAAGGTGGCAGGgtgagcaaat ... ttttctgcagAAACAAACAAACAGGTTATACCTC