1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTGCCATTGTTGGTCCAGGAAATGAATTAGGCAAACCAATTGATATCAATGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctattattttcaattttcatctgtttaagattaagatgcatgatgtgattatactgagctgcatgatgtgattaatatgtcag
species | Zea mays |
transcript | GRMZM2G093359_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGNACCTTEST: gi|12046552|gb|BF728691.1|BF728691
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTT
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|78180016|gb|DV550389.1|DV550389
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|6973663|gb|AW438237.1|AW438237
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|149094603|gb|EE180134.2|EE180134
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGGCTACCTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCEST: gi|149106513|gb|EE188405.2|EE188405
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTC
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCCTTGG-
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCC-TTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCCATTGTTGGTCCAGGAAATGAATTAGGCAAACCAATTGATATCAATGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctattattttcaattttcatctgtttaagattaagatgcatgatgtgattatactgagctgcatgatgtgattaatatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG