1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAGGCTCTCTGTGAACTGGAGCTTCCTTATGTTCTCCAGAACGTCGGAGAGGGATCGTCGAGGACGGATTTGCTTCTAAGGAAGTCGGGCTCTAAGCAGgtaataataatgctagccatgcatatggcacaccatgagaagtagaagtaggcattgaccattttcatgataggatctgaataggtgatgctcagaaacg...
species | Zea mays |
transcript | GRMZM2G086971_T05 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGGGATCGTCGAGGACGGATTTGCTTCTAAGGAAGTCGGGCTCTAAGCAG GTGCCATATCTGATCGACCCTAACACTGGATTCCAGTCGGGCGACCATAAGEST: gi|4680802|gb|AI629472.1|AI629472
genomic: AGGGATCGTCGAGGACGGATTTGCTTCTAAGGAAGTCGGGCTCTAAGCAGgtaataataa ... tgcattgcagGTGCCATATCTGATCGACCCTAACACTGGATTCCAGTCGGGCGACCATAAG
EST: AGGGATCGTCGAGGACGGATTTGCTTCTAAGGAAGTCGGGCTCTAAGCAG GTGCCATATCTGATCGACCCTAACACTGGATTCCAGTCGGGCGACCATAAGEST: gi|50324094|gb|CO519220.1|CO519220
genomic: AGGGATCGTCGAGGACGGATTTGCTTCTAAGGAAGTCGGGCTCTAAGCAGgtaataataa ... tgcattgcagGTGCCATATCTGATCGACCCTAACACTGGATTCCAGTCGGGCGACCATAAG
EST: AGGGATCGTCGAGGACGGATTTGCTTCTAAGGAAGTCGGGCTCTAAGCAG GTGCCATATCTGATCGACCCTAACACTGGATTCCAGTCGGGCGACCATAAGEST: gi|32938253|gb|CF043072.1|CF043072
genomic: AGGGATCGTCGAGGACGGATTTGCTTCTAAGGAAGTCGGGCTCTAAGCAGgtaataataa ... tgcattgcagGTGCCATATCTGATCGACCCTAACACTGGATTCCAGTCGGGCGACCATAAG
EST: AGGGATCGTCGAGGACGGATTTGCTTGTAAGGAAGTCGGGCTCTAAGCAG GTGCCGTATCTGATCGACCCTAACACTGGATTCCAGTCGGGCGACCATAAG
genomic: AGGGATCGTCGAGGACGGATTTGCTTCTAAGGAAGTCGGGCTCTAAGCAGgtaataataa ... tgcattgcagGTGCCATATCTGATCGACCCTAACACTGGATTCCAGTCGGGCGACCATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGCTCTCTGTGAACTGGAGCTTCCTTATGTTCTCCAGAACGTCGGAGAGGGATCGTCGAGGACGGATTTGCTTCTAAGGAAGTCGGGCTCTAAGCAGgtaataataatgctagccatgcatatggcacaccatgagaagtagaagtaggcattgaccattttcatgataggatctgaataggtgatgctcagaaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA