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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAATTCGGTCTCTGTTCAGTGCCACTTTGCCCGATTCAATTGAGACTCTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAAgtgagtttcttcctctaaatatggacctaaatcttgtctattttctttgttatttcatcactttctgttcaacttatcag

Basic information

species Zea mays
transcript GRMZM2G083580_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083580_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g45360.1 (Oryza sativa), 5'ss of exon 7
CAATAATTCGGTCTCTGTTCAGTGCCACTTTGCCCGATTCAATTGAGACTCTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAAgtgagtttcttcctctaaatatggacc-taaatcttgtctattttctttgttatttc-atcactttctgttcaacttatcag
|||||||||| |||||||| |||||||| ||||| |||||||| || || ||||||||||| |||||||| |||||  |||||||||| || || ||||||| ||| |     ||  | | || ||    ||   | | |  ||||   |||||||   ||| |   | |||| | || |||
CAATAATTCGATCTCTGTTTAGTGCCACATTGCCTGATTCAATAGAAACGCTTGCACGCACGATAATGCACGATGCTGTTCGAGTCATCGTGGGAAGAAAgtaagtattgctttcacagtgtgtactgcgaaaactattt--tttcagggttatttttgtcattaattcttca-cata-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211318658|gb|FL467575.1|FL467575
EST:     CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAA                         GAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
genomic: CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAAgtgagtttct ... aacttatcagGAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
EST: gi|211460875|gb|FL473429.1|FL473429
EST:     CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAA                         GAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
genomic: CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAAgtgagtttct ... aacttatcagGAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
EST: gi|71766778|gb|DR964715.1|DR964715
EST:     CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAA                         GAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
genomic: CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAAgtgagtttct ... aacttatcagGAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
EST: gi|78115306|gb|DV533694.1|DV533694
EST:     CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAA                         GAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
genomic: CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAAgtgagtttct ... aacttatcagGAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
EST: gi|32944128|gb|CF048947.1|CF048947
EST:     TTGCACGCACTATAATGGCATGATGCCATTCGAGTCATTGTCGGCAGAAA                         GAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
genomic: TTGCACGCACTATAATG-CATGATGCCATTCGAGTCATTGTCGGCAGAAAgtgagtttct ... aacttatcagGAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
EST: gi|33098086|gb|CF058046.1|CF058046
EST:     CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAA                         GAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
genomic: CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAAgtgagtttct ... aacttatcagGAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
EST: gi|32930531|gb|CF035343.1|CF035343
EST:     CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAA                         GAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA
genomic: CTTGCACGCACTATAATGCATGATGCCATTCGAGTCATTGTCGGCAGAAAgtgagtttct ... aacttatcagGAATTCGGCCTCTTCACTGATTAAGCAAAAGTTGATTTTTGCTGGAACTGA