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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTGACTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAGgttcactttcattgttctagcgagtagcttcagcgtttgtaaaagactggaattctatcattaataatttgatattgttgattaacag

Basic information

species Zea mays
transcript GRMZM2G081188_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081188_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g66350.1 (Oryza sativa), 5'ss of exon 7
CGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTGACTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAGgttcactttcattgttctagcgagtagcttcagcg-tttgtaaaagactggaattctatcattaataatttgatattgttgat--taacag
 || ||||| ||||| ||||| || |||||| ||||||| ||| |||||||||| |||||||||||||| ||||| |||||   |||||||||||| ||||||| | |||||| ||  |     | | ||||| | ||| |  ||  ||||||   | |     |||  ||| |    ||  |  || |||
GGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTGACTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattcattctttcaagttattgtttcagtgctttcttgaactctggaagattttataacatatgttggttccattccttttaccag

upper sequence: GRMZM2G081188_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv12s0035g01870.t01 (Vitis vinifera), 5'ss of exon 7
CGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTGACTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAGgttcactttcat-tgttctagcgagtagcttcagcgtttgtaaa---------agactggaattctatcattaataatttgatattgttgattaacag--
 || ||||| ||||||||| | ||||| ||||| ||||| |||||||||||  | |||||  ||||||| ||||||||| || | ||||| || |||||||||   |||  | ||  |     | |  |||   | ||| |  |         | |    |   |   |                               
GGGAACTGGATTGAGTATCATGATCTCCAAAAGAAATCCGTCACTGGTGACCACATTTGCACTCCTTTCATGTGGATATGTCTTAAGTTCTTACCAAGAGgtttgattttgtatgagcagtaaaattcctttttcttttttgtattttttaccaaatcacaccccccccccccccccccccccnnnnnnnnnnnnnnnnn
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211302733|gb|FL372536.1|FL372536
EST:     CTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAG                         GTGAGGTCTGTTGTGCTGAATACCCTAAACAGGGCAAGGTTTACCGTCGCA
genomic: CTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAGgttcactttc ... tgattaacagGTGAGGTCTGTTGTGCTGAATACCCTAAACAGGGCAAGGTTTACCGTCGCA
EST: gi|211421799|gb|FL427212.1|FL427212
EST:     CTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAG                         GTGAGGTCTGTTGTGCTGAATACCCTAAACAGGGCAAGGTTTACCGTCGCA
genomic: CTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAGgttcactttc ... tgattaacagGTGAGGTCTGTTGTGCTGAATACCCTAAACAGGGCAAGGTTTACCGTCGCA
EST: gi|31353527|gb|CD437884.1|CD437884
EST:     CTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAG                         GTGAGGTCTGTTGTGCTGAATACCCTAAACAGGGCAAGGTTTACCGTCGCA
genomic: CTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAGgttcactttc ... tgattaacagGTGAGGTCTGTTGTGCTGAATACCCTAAACAGGGCAAGGTTTACCGTCGCA
EST: gi|32826967|gb|CD966645.1|CD966645
EST:     CTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAG                         GTGAGGTCTGTTGTGCTGAATACCCTAAACAGGGCAAGGTTTACCGTCGCA
genomic: CTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAGgttcactttc ... tgattaacagGTGAGGTCTGTTGTGCTGAATACCCTAAACAGGGCAAGGTTTACCGTCGCA
EST: gi|32930803|gb|CF035615.1|CF035615
EST:     CTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAG                         GTGAGGTCTGTTGTGCTGAATACCCTAAACAGGGCAAGGTTTACCGTCGCA
genomic: CTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAGAGgttcactttc ... tgattaacagGTGAGGTCTGTTGTGCTGAATACCCTAAACAGGGCAAGGTTTACCGTCGCA