1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgacagttgaactgggaaactcatagcacgcacggttggcactggcagtagtagctcatgcaaacagtggctctccggctacctctgcgtttgct...
species | Zea mays |
transcript | GRMZM2G071620_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|78104752|gb|DV523170.1|DV523170
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|78104753|gb|DV523171.1|DV523171
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|116824571|gb|EC868205.1|EC868205
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GGTTCTGAAAAGGAAG CTGCACGAGATTTGAGGCAGA-G-TGCTTCTCCCCCACAATTGGCGTGGCAEST: gi|211236050|gb|FL156597.1|FL156597
genomic: GGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAG-TTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|30031660|gb|CB833511.1|CB833511
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|71448410|gb|DR829460.1|DR829460
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|18174972|gb|BM350360.1|BM350360
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTAAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|71762711|gb|DR960648.1|DR960648
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|50326014|gb|CO521140.1|CO521140
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|32165114|gb|CD670432.1|CD670432
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|31558052|gb|CD527264.1|CD527264
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|76285216|gb|DV024784.1|DV024784
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|32836421|gb|CD976099.1|CD976099
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCGCAATTGGCGTGGCAAEST: gi|91878815|gb|EB408772.1|EB408772
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: GAACAAATGGTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAAEST: gi|148980768|gb|EE027336.2|EE027336
genomic: GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
EST: AAAGG-ACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAG CTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
genomic: AAAGGAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgaca ... attgtttcagCTGCACGAGTTTGAGGCAGAGGCTGCTTCTCCCCCACAATTGGCGTGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACAAATGCTGCAAGACGCTAACAGGGTTCTGAAAAGGAAGgtaagtgacagttgaactgggaaactcatagcacgcacggttggcactggcagtagtagctcatgcaaacagtggctctccggctacctctgcgtttgct
- - - ATGCTG
- - - TGCTGC
- - - - - GCAAGA
- - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctacctc