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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTCTCAGCTAAGACAAAAATATTCTTCTCTACTGCTGTTGGCATCTGGGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAGgtgcttggctcttcctttgatgcaagtacttcctcttagaattcttttgactcggttttgtttactggtgcatgcacatgaccaaacag

Basic information

species Zea mays
transcript GRMZM2G070708_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 7
GAACTCTCAGCTAAGACAAAAATATTCTTCTCTACTGCTGTTGGCATCTGGGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAGgtgcttggctcttcctttgatgcaagtacttcctcttagaattcttttgactcggttttgtttactggtgcatgcacatgaccaaacag
|||||||||||||||||||| || ||||||||||| || ||||| || ||||| |||||||| || || ||||| ||||||||||||||||| ||| ||||||  |   | ||  |||    || || |   |  || |  || | ||||     | |  |   |   | ||||   |  ||  |||||
GAACTCTCAGCTAAGACAAAGATTTTCTTCTCTACAGCAGTTGGTATTTGGGATGCTGACTTTTATGTGAAGGTTGATGATGATGTGCATGTGAACTTAGgtgggtatatttttttttt---cacgtgc---cgattggccttatgttgaaatc-tataataacccacttcatgtg-acaacataacag

upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G11330.1 (Glycine max), 5'ss of exon 7
GAACTCTCAGCTAAGACAAAAATATTCTTCTCTACTGCTGTTGGCATCTGGGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAGgtgcttggctcttcctttgatgcaagtacttcctcttagaattcttttgactcggttttgtttactgg-tgcatgcacatga--------ccaaacag--------------------------------
|| || || || |||||||| || ||||| || |||||||||   || ||||| ||||| ||||| |||||||| ||||||||||| ||||| ||  ||||| | ||     ||    ||| |  |   |   ||||    ||   ||| |    |||  |||||    | | |  |    |        ||||| |                                 
GAGCTGTCTGCAAAGACAAAGATTTTCTTTTCCACTGCTGTTTCAATGTGGGATGCTGATTTCTATGTCAAGGTGGATGATGATGTCCATGTCAATTTAGgtacatg--ctatctcaagattcttgatttctttcttgtgctttccttgccattttttcctttaccaccttcctctatcccatttctctcccaaataagttttaatattccaacatgtgttgctgtttag

upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 7
GAACTCTCAGCTAAGACAAAAATATTCTTCTCTACTGCTGTTGGCATCTGGGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAGgtgcttggctcttc-----ctttgatg---caagtacttcctcttagaat--tcttttgactcggttttgtttactggtgcatgcaca----tgaccaaacag----------------------
|| || || || |||||||| || ||||| || ||||| |||   || ||||||||||| ||||| |||||||| ||||||||||| ||||| ||  ||||| | ||     ||     | |||||    |   |  |||||       |  || |||  | |  |  | | | |   | |   | ||    ||   ||| |                       
GAGCTGTCTGCAAAGACAAAGATTTTCTTTTCCACTGCAGTTTCAATGTGGGACGCTGATTTCTATGTCAAGGTGGATGATGATGTCCATGTCAATTTAGgtacatgctatctcaagatccttgatttctctcttgtttccttcccatttcttcctttaccaccttcctctatcccatttctcacccaaagatgcttaaatattctgacatgtgttgctttttag

upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv18s0001g04150.t01 (Vitis vinifera), 5'ss of exon 7
GAACTCTCAGCTAAGACAAAAATATTCTTCTCTACTGCTGTTGGCATCTGGGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAGgtgcttggctcttcctttgatgcaagtacttcctcttag-aattcttttgactcggttttgttta--ctggtgcatgcacatgaccaaacag------------------------
||| | || || || |||||||||||||| || |||||||| |  |  ||||| ||||| ||||| ||||| || ||||||||||| ||||| ||  | |||  |     | || ||   |     | || |    ||   |   ||| |||      |||   |   |||      ||  |    |  |                          
GAATTGTCCGCAAAAACAAAAATATTCTTTTCAACTGCTGTAGCAAAATGGGATGCTGAATTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTGGgtaatgaatccctctttccttttttatcctccacaatactgaaaatttggacaaaccattgccaaacttgggtttctcaagttgttattcttgttgtggttttttttttggtatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91867822|gb|EB399810.1|EB399810
EST:     GGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAG                         GAATGCTTGCCACTACCCTTGCTCGGC
genomic: GGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAGgtgcttggct ... gaccaaacagGAATGCTTGCCACTACCCTTGCTCGGC
EST: gi|166552015|gb|EG315947.1|EG315947
EST:     ATGATGATGTGCATGTAAACCTAG                         GAATGCTTGCCACTACCCTTGCTCGGCATAAATCGAAACCAAGAACTTATA
genomic: ATGATGATGTGCATGTAAACCTAGgtgcttggct ... gaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATCGAAACCAAGAACTTATA
EST: gi|211169871|gb|FL077600.1|FL077600
EST:     GGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAG                         GAATGCTTGCCACTACCCTTGCTCGGCATAAATCGAAACCAAGAACTTATA
genomic: GGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAGgtgcttggct ... gaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATCGAAACCAAGAACTTATA
EST: gi|71447666|gb|DR828716.1|DR828716
EST:     GGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAG                         GAATGCTTGCCACTACCCTTGCTCGGCATAAATCGAAACCAAGAACTTATA
genomic: GGACGCTGACTTCTACGTCAAGGTCGATGATGATGTGCATGTAAACCTAGgtgcttggct ... gaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATCGAAACCAAGAACTTATA