1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCATCACAACCTGGGAGCTTGCGTCGCTGGGATGGTCCATTCCTTTGCCAGAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAGgtcttatttggagacctgatatctatatttgattatttatcacgaagcatgaatatgccttttcttatactgtctaccaccatgaatattctgcag
species | Zea mays |
transcript | GRMZM2G052699_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAG ATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATCEST: gi|31356932|gb|CD441289.1|CD441289
genomic: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAGgtcttatttg ... tattctgcagATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATC
EST: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAG ATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATCEST: gi|71432148|gb|DR813198.1|DR813198
genomic: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAGgtcttatttg ... tattctgcagATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATC
EST: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAG ATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATCEST: gi|60359717|gb|DN226690.1|DN226690
genomic: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAGgtcttatttg ... tattctgcagATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATC
EST: AAAAGAAAGAAGCAAAGGAGGGAAAGCGTCGTTCACGAG ATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATCEST: gi|32937986|gb|CF042805.1|CF042805
genomic: AAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAGgtcttatttg ... tattctgcagATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATC
EST: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAG ATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATCEST: gi|71435075|gb|DR816125.1|DR816125
genomic: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAGgtcttatttg ... tattctgcagATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATC
EST: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAG ATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATCEST: gi|91872362|gb|EB402319.1|EB402319
genomic: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAGgtcttatttg ... tattctgcagATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATC
EST: AAAGAAAGAAGCAATGGAGGGAAAGGGTCGTTCTCGAG ATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATCEST: gi|32935392|gb|CF040204.1|CF040204
genomic: AAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAGgtcttatttg ... tattctgcagATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATC
EST: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAG ATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATC
genomic: GAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAGgtcttatttg ... tattctgcagATTCATCAAGAAACAGTGGGTAAGTGAATAGTTGACATGTGTAGAGTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCACAACCTGGGAGCTTGCGTCGCTGGGATGGTCCATTCCTTTGCCAGAGCTGTCAGGAAAAGAAAGAAGCAATGGAGGGAAAGCGTCGTTCACGAGgtcttatttggagacctgatatctatatttgattatttatcacgaagcatgaatatgccttttcttatactgtctaccaccatgaatattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG