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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgttcatctgacaattgcaatatatttgctttgattttcataaattatcattcaagttatcttacggttttgatttgattttttctatcag

Basic information

species Zea mays
transcript GRMZM2G044027_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 7
GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgttcatctgacaattgcaatatatttgctttg-attttcataaattatcattcaagttatcttacggttttgatttgattttttctatcag
|||||||||||| || || ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||  | ||||| | | |||| | || || ||||    |  |||||| |||  ||      |||||  |||||    |||| |||||||  |  |||||
GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgttc-tatcacaaatacactacatttatcctatattttcttaatctagtgca-aagttcacttac----ttgaattgatttacttcatcag

upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 7
GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgttcatctgacaattgcaatatatttgctttgattttcataa-attatcattcaagttatcttacggttttgatttgattttttctatcag-
||||||  | |||||||||||||| || ||||| ||||| |||| |||||| ||| | || | ||| ||||||||||| ||||| ||||||| ||   ||  |||     |     | ||| |   || | ||  || | ||  ||    | | |     |   | |   |    | |   | ||    
GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAGGCTATTGGGGCAATGTGAACCCTATTGgtacatgcttttctctttgtctcagtctgtatctttcttaaattaaattatatcttctgctatgattgtgaaaaatatctgtgcagtataaaccatagag

upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 7
GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgttcatctgacaattgcaatatatttgctttgattttcataaattatcattcaagttatcttacggttttgatttgattttttctatcag------
||||||  | |||||||||||||| || ||||| ||||| |||| |||||| ||| | ||   ||| ||||||||||| ||||| ||||||  || || |  |||     |  |||| | |||   |||   ||| ||||| |   |  |  || | ||| | || |||      | | |  |  |       
GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGCTATTGGGGCAATGTGAACCCTATTGgt--atatgcttttctctttgtctcaatctgttt--cttgggcttcttaaatgaaattatatcttctgttatgattgtgaaagatatctgtgcagtataaacca

upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 7
GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgttcatctgacaattgcaatatatttgctttgattttcataaattatcattcaagttatcttacggtt-------ttgatttgattttttctatcag
||| ||| | |||||||| || ||||| ||||| ||||| ||||||||||| ||||| |||  ||| ||||| |||||||||||||| |||  |||||    | | |   ||    ||  |||| |||   ||| | |||  |  |   ||   |    |            | |  |  |   | |||||   
GATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgt--atttgcatctttcatggttttcttaggtttgttttttatttaaaaaaaaaaaaaggaaaagaaaagaaaagaaggaaaataggatgaaaaatctctat---

upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 7
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 7
GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttg-ttcatctgaca-----attgcaatat-atttgctttgattttcataaattatcattca-agttatcttacg----gttttgatttgattttttctatcag---------
|||| |  | || || || |||||||||||||| |||||  | ||||||||||| || ||||  |||||||| || || ||||||||||||||||     |||  | |||       ||||  || |    || ||   ||  | || | | || || | | ||  |||      | ||   || |  ||   | |            
GATTCTTCTCACGTCTACCTCTGAAGTTTATGGAGATCCTTTGGAGCATCCTCAGACAGAGGAATACTGGGGAAACGTAAACCCAATTGgtaaatccaactcacgttacacgcttggtgcaccatcacgctctgtgcagtttctgaactctgatacacaatcattctacacaaaatattaccttaacgttgcttcttgtcttgtgtag

upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 7
lower sequence: EFJ17446 (Selaginella moellendorffii), 5'ss of exon 6
GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgttcatctgacaattgcaatatatttgctttgattttcataaattatcattcaagttatcttacggttttgatttgattttttctatcag
|||| |  | || ||||| || ||||||||||| ||||| || |||||||| ||||  ||||  |||||||||||||| || || || ||||     || || | || | |||   | | |      || |  |  |     | ||                                         
GATTCTACTCACGTCAACCTCCGAAGTTTATGGGGATCCACTGGAGCATCCACAAAAGGAGGAATACTGGGGCAATGTGAATCCCATAGgta----cgtgcaccagatatttgtcttgtctactgcctgctcattgtgc-cgagcag----------------------------------------

upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 7
lower sequence: EFJ35029 (Selaginella moellendorffii), 5'ss of exon 6
GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgttcatctgacaattgcaatatatttgctttgattttcataaattatcattcaagttatcttacggttttgatttgattttttctatcag
||||||  | || ||||| || ||||||||||| ||||| || |||||||| ||||  ||||  |||||||||||||| || || || ||||     || || | || | |||   | | |      || |  |  |      |||  ||                                     
GATTTTACTCACGTCAACCTCCGAAGTTTATGGGGATCCACTGGAGCATCCACAAAAGGAGGAATACTGGGGCAATGTGAATCCCATAGgta----cgtgcaccagatatttgtcttgtctactgcctgctcattgtg-----tcaagcag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149097834|gb|EE183762.2|EE183762
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32841175|gb|CD980856.1|CD980856
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|14206834|gb|BG840512.1|BG840512
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32909997|gb|CF014809.1|CF014809
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|6194647|gb|AW146751.1|AW146751
EST:     ACTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32841101|gb|CD980782.1|CD980782
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|6020952|gb|AW065880.1|AW065880
EST:     ACTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|211032180|gb|FL277400.1|FL277400
EST:     ACTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32850262|gb|CD989943.1|CD989943
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCCGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32850632|gb|CD990313.1|CD990313
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32850126|gb|CD989807.1|CD989807
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGAGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32850554|gb|CD990235.1|CD990235
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|213173372|gb|FM186537.1|FM186537
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32850616|gb|CD990297.1|CD990297
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|148945878|gb|EC891170.2|EC891170
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32840343|gb|CD980024.1|CD980024
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32840626|gb|CD980307.1|CD980307
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGGTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32849033|gb|CD988714.1|CD988714
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|67016223|gb|CO444972.1|CO444972
EST:     ACTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|67013235|gb|CO441984.1|CO441984
EST:     ACTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|21987903|gb|BQ779431.1|BQ779431
EST:     ACTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|213192508|gb|FM182601.1|FM182601
EST:     GCTTGAGCATCCTCAAACCGAGGGCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|32165003|gb|CD670321.1|CD670321
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
EST: gi|148951041|gb|EC896695.2|EC896695
EST:     GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG                         GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT
genomic: GCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTGgtaaatttgt ... tttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGT