1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCGCAATTTGCTGGCAAAGGGTGCATTTGCTGCCCAGATGATCGATCTTGGATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagctttccaaacctttggatttttaatattccacaggaaaatatgcatcaaatattggaattttcatatctgaaccattggttcaattgaagga...
species | Zea mays |
transcript | GRMZM2G019999_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|78080157|gb|DV508569.1|DV508569
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|5847348|gb|AW000427.1|AW000427
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTTEST: gi|60401227|gb|DN234034.1|DN234034
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|32851781|gb|CD991462.1|CD991462
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GGACTGATGAG GATCTGTGAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|149089827|gb|EE179105.2|EE179105
genomic: GGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: ATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|6031414|gb|AW076316.1|AW076316
genomic: ATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTTEST: gi|148949226|gb|EC894668.2|EC894668
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: CTTGAAAGCTCAAGCATGGACTGATGAG GATTTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|5915146|gb|AW052787.1|AW052787
genomic: CTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTTEST: gi|5846782|gb|AI999865.1|AI999865
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: AAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTTEST: gi|76909294|gb|DV163314.1|DV163314
genomic: AAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|5901299|gb|AW042399.1|AW042399
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: AACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTTEST: gi|5325216|gb|AI783407.1|AI783407
genomic: AACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTTEST: gi|5296243|gb|AI782923.1|AI782923
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: CTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTTEST: gi|149089817|gb|EE179093.2|EE179093
genomic: CTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|6194895|gb|AW146999.1|AW146999
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGGTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTTEST: gi|60350326|gb|DN217299.1|DN217299
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|89247015|gb|DY618801.1|DY618801
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|6020588|gb|AW065621.1|AW065621
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTTEST: gi|18170707|gb|BM340547.1|BM340547
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|61119705|gb|DN560666.1|DN560666
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAG GATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTCEST: gi|32851780|gb|CD991461.1|CD991461
genomic: GATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
EST: GGACTGATNAG GATCTGTTAGATGCTCTGAATCANCTAGAGGTGGGACTCAAAGAAAACCTC
genomic: GGACTGATGAGgtgaggagct ... atgcacccagGATCTGTTAGATGCTCTGAATCAACTAGAGGTGGGACTCAAAGAAAACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCAATTTGCTGGCAAAGGGTGCATTTGCTGCCCAGATGATCGATCTTGGATTGCCACAAATGGTACAAAACTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagctttccaaacctttggatttttaatattccacaggaaaatatgcatcaaatattggaattttcatatctgaaccattggttcaattgaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggaaaa