1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTAGGTAAATCCGACACTAATGTGGTGCAGAGAATAAAAAAAGCACTGCCAAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGGgtaagtggatactgctctttcttttgctatcattccatctcatattctgctacaatattgtcttaacactagtgttctttcttctatgtgcag
species | Zea mays |
transcript | GRMZM2G019673_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGG GCAC-AGACNTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTEST: gi|67026461|gb|CO455210.1|CO455210
genomic: ATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGGgtaagtggat ... ctatgtgcagGCACAAGAC-TTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTT
EST: AAATTTCCCCCCAA-GAAAGTTGCTAGAGATGCCCCATTCATGGAGT-G GCCCAAGACTTTCAATAT-CTGGAG-TTCATCACAGACATGT-TCTCACCTEST: gi|211427631|gb|FL452062.1|FL452062
genomic: AAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGGgtaagtggat ... ctatgtgcagGCACAAGACTTTCAGGATCCT-GAGATTCATCACAGACATGTGTCTCACTT
EST: CAAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGG GCACAAGACTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTGEST: gi|78113504|gb|DV531895.1|DV531895
genomic: CAAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGGgtaagtggat ... ctatgtgcagGCACAAGACTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTG
EST: CAAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGG GCACAAGACTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTG
genomic: CAAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGGgtaagtggat ... ctatgtgcagGCACAAGACTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAGGTAAATCCGACACTAATGTGGTGCAGAGAATAAAAAAAGCACTGCCAAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGGgtaagtggatactgctctttcttttgctatcattccatctcatattctgctacaatattgtcttaacactagtgttctttcttctatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA