1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CATGTGTCTCACTTGTTTGGTCTTTATCCTGGACATACTATGTCACTTGAGGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttttttcttaaagtaaatgtgcataaggacatgttttagttttttgttttgctcggttctgcgtttgatgataattttatcttgattcgtgct...
species | Zea mays |
transcript | GRMZM2G019673_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAG GTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTCEST: gi|37377099|gb|CF625124.1|CF625124
genomic: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttt ... cattgctcagGTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTC
EST: ACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAG GTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCTTATGGGCTCEST: gi|67026461|gb|CO455210.1|CO455210
genomic: ACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttt ... cattgctcagGTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTC
EST: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAG GTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTCEST: gi|211427630|gb|FL452061.1|FL452061
genomic: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttt ... cattgctcagGTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTC
EST: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAG GTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTCEST: gi|211427631|gb|FL452062.1|FL452062
genomic: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttt ... cattgctcagGTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTC
EST: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAG GTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTCEST: gi|37401637|gb|CF638187.1|CF638187
genomic: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttt ... cattgctcagGTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTC
EST: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAG GTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTCEST: gi|71449808|gb|DR830858.1|DR830858
genomic: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttt ... cattgctcagGTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTC
EST: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAG GTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTCEST: gi|60346394|gb|DN213367.1|DN213367
genomic: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttt ... cattgctcagGTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTC
EST: GGAAACACTTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAG GTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTCEST: gi|78113504|gb|DV531895.1|DV531895
genomic: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttt ... cattgctcagGTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTC
EST: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAG GTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTC
genomic: GGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttt ... cattgctcagGTGACGAAGGCCCAGGCTGGTCTACTTCATGGAAAATGGTCCTATGGGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTGTCTCACTTGTTTGGTCTTTATCCTGGACATACTATGTCACTTGAGGAAACACCTGACCTCTGCAGAGCTGTTGCCAATAGTCTTTATAAAAGAGgtaccttttttttcttaaagtaaatgtgcataaggacatgttttagttttttgttttgctcggttctgcgtttgatgataattttatcttgattcgtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT