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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttccattgttttataacccatagttactgtaaaagttggtttcctcaattgtatggactaaatgggttaaatattagtctgcacacatttaagct...

Basic information

species Zea mays
transcript GRMZM2G007915_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007915_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g16540.1 (Oryza sativa), 5'ss of exon 7
CAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttccattgttttataacccatagttactgtaaaagttggtttcctc----aat-----tgtatggactaaatgggttaaatattagtc-tgcacacatttaagct------------------------------------------------------------------------------
|||||||||| ||||| ||||||||| | || ||||| ||||| ||||||||  | |||||||| |||||||||||||||| |||||| || ||||||||||||||||  |  |||| | |  |    ||| | ||||  ||||||||  |    |||     | |||   | | || | |||| ||| | |      ||||| | |                                                                                 
CAGCCATTGCTTCAACAAATGCAATTGTTTCTGCTGCATGTGCGTTGGAAGCTCTTAAGCTTATCTCTGGGTGCAGCAAAACTGTGTCGAATTATCTCACgtgagttcactacttttctgagtc----ttattttaaattttggtttcgacttggaatatttatttatccccaagattgtttaactataattaacaagcacatctgaagcgattgatttcttgaccaggttagaaacacttaacatggttctgtttgaagtgcattatttttctttgactatctgcag

upper sequence: GRMZM2G007915_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA17G01940.2 (Glycine max), 5'ss of exon 7
CAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttccattgttttataacccatagttactgtaaaagttggtttcctcaattgtatggactaaatgggttaaatattagtctgcacacatttaagct
|||| || || |||||||||||||||||||||||||| |||||| | ||| | |||||| ||    | | ||||||||||| | |||| |||||| | ||||  |  |  || | |||| |    | |    | |    ||   | |  |  ||||  |        | |                              
CAGCTATAGCTTCAACGAATGCAATTATATCGGCTGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACgtatggcct-ttatcttattattatttgcc-ttttggccgtaaatattattgattggttaatacctgtag------------------------------

upper sequence: GRMZM2G007915_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv05s0020g02820.t01 (Vitis vinifera), 5'ss of exon 7
CAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttcca-ttgttttataacccatagttactgtaaaagttggtttcctcaattgtatggactaaatgggttaaatattagtctgcacacatt-taagct--
| ||||||||||| || ||||||||||| || ||||| |||||| ||||| |||| ||| || | || || |||||||||| | | ||||||||||| ||||| |    | ||  | |  ||    || ||| | |  || ||       ||  ||||      || |||| |   || ||| |      | ||  || | |  
CGGCCATTGCATCCACAAATGCAATTATTTCAGCTGCATGTGCACTGGAAACCTTGAAGATTGTATCAGGATGCAGCAAAACTTTATCAAACTATCTAACgtgcgccatacttcctcttcaatttttaattaatattcaacttcacaaagtc--ttgtccttgttatatggatc--attttattagaactaaatgataggttaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67018949|gb|CO447698.1|CO447698
EST:     GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
EST: gi|78124195|gb|DV542579.1|DV542579
EST:     GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
EST: gi|71419961|gb|DR804957.1|DR804957
EST:     GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
EST: gi|60398591|gb|DN231407.1|DN231407
EST:     TGTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: TGTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
EST: gi|71760307|gb|DR958244.1|DR958244
EST:     AAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: AAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
EST: gi|5847480|gb|AW000559.1|AW000559
EST:     GTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACGCACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: GTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
EST: gi|71311092|gb|DR791860.1|DR791860
EST:     GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
EST: gi|149099068|gb|EE185088.2|EE185088
EST:     GCCTTAAAGCTTATTTCTGGGGGCAGCAAAAGTGTGTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
EST: gi|76287586|gb|DV027154.1|DV027154
EST:     GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
EST: gi|5901235|gb|AW042335.1|AW042335
EST:     GTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACGCACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: GTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
EST: gi|211475001|gb|FK984421.1|FK984421
EST:     GCCTTAAAGCTTATTTCTGGGTGCARCAAAAGTGTGTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACACACATTAAAGT
genomic: GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGT
EST: gi|71431173|gb|DR812223.1|DR812223
EST:     GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCAC                         GTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA
genomic: GCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACgtgagttcca ... ctatttgcagGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGA