1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAGGGCGACGTCTTCCACCTCATCTCCGGCGTCTGGCGGAGCCCCGCCGAGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAAGTCATCAAGgtacgtgcacacgtgtccctccctcccttactagcgcagtagcgctccatataattgtcatcgggagaaacgaacccgcaacttaaccctaaacctagac...
species | Zea mays |
transcript | GRMZM2G006578_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAAGTCATCAAG ATGCTGCTGAGCCACGTAGAGCCCCTGACCGAACAGCAGATCGTGGGCGTGEST: gi|149110644|gb|EE294230.2|EE294230
genomic: AGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAAGTCATCAAGgtacgtgcac ... atgtatacagATGCTGCTGAGCCACGTAGAGCCCCTGACCGAACAGCAGATCGTGGGCGTG
EST: CCCTCCGAGGTCATCAAG ATGCTGCTGAGCCACGTAGAGCCCCTGACCGAACAGCAGATCGTGGGCGTGEST: gi|76291952|gb|DV031520.1|DV031520
genomic: CCCTCCGAAGTCATCAAGgtacgtgcac ... atgtatacagATGCTGCTGAGCCACGTAGAGCCCCTGACCGAACAGCAGATCGTGGGCGTG
EST: GCTTCCGCCCCTCCGAAGTCATCAAG ATGCTGCTGAGCCACGTAGAGCCCCTGACCGAACAGCAGATCGTGGGCGTGEST: gi|67040862|gb|CO467117.1|CO467117
genomic: GCTTCCGCCCCTCCGAAGTCATCAAGgtacgtgcac ... atgtatacagATGCTGCTGAGCCACGTAGAGCCCCTGACCGAACAGCAGATCGTGGGCGTG
EST: AGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAAGTCATCAAG ATGCTGCTGAGCCACGTAGAGCCCCTGACCGAACAGCAGATCGTGGGCGTG
genomic: AGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAAGTCATCAAGgtacgtgcac ... atgtatacagATGCTGCTGAGCCACGTAGAGCCCCTGACCGAACAGCAGATCGTGGGCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGGCGACGTCTTCCACCTCATCTCCGGCGTCTGGCGGAGCCCCGCCGAGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAAGTCATCAAGgtacgtgcacacgtgtccctccctcccttactagcgcagtagcgctccatataattgtcatcgggagaaacgaacccgcaacttaaccctaaacctagac
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT