1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataaactttcaacaggaacttttggtcatcacagtttcattttgtctattagtgtggctaactcatatacag
species | Zea mays |
transcript | GRMZM2G003692_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGGGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|50324032|gb|CO519158.1|CO519158
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|71320805|gb|DR797121.1|DR797121
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|91877563|gb|EB407520.1|EB407520
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|88753506|gb|DY537647.1|DY537647
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|37387558|gb|CF630976.1|CF630976
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGGGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|5343223|gb|AI795408.1|AI795408
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGGGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|91872747|gb|EB402704.1|EB402704
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|6095476|gb|AW120143.1|AW120143
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGGGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|93015973|gb|EB641493.1|EB641493
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCCCCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|71758502|gb|DR956439.1|DR956439
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|37376662|gb|CF624883.1|CF624883
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGGGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|71768646|gb|DR966583.1|DR966583
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|32864069|gb|CF003751.1|CF003751
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTGGATAGAGGGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTEST: gi|6194694|gb|AW146798.1|AW146798
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
EST: GCCTTCTAGCACCTTACATGCTTGATAGAGGGATGGGCCATTTTGTTGTG ATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
genomic: GCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataa ... tcatatacagATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAGCACCTTACATGCTTGATAGAGAGATGGGCCATTTTGTTGTGgtatgtataaactttcaacaggaacttttggtcatcacagtttcattttgtctattagtgtggctaactcatatacag
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