1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatctgtgatttgattatgccaaaaatccaagtctctttttttgttaacagcttaatttcggggaagccagttttttgaccagttttgttacatt...
species | Zea mays |
transcript | GRMZM2G442404_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGEST: gi|37398527|gb|CF636579.1|CF636579
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACG
EST: TGTGTTGGGGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|4776156|gb|AI665159.1|AI665159
genomic: TGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|211024205|gb|FL472254.1|FL472254
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|32863266|gb|CF002948.1|CF002948
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|32925505|gb|CF030317.1|CF030317
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|148973759|gb|EE024892.2|EE024892
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACGTGAAATTCAG GAAGAACAGTTCAGGGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|71307033|gb|DR789670.1|DR789670
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|111188864|gb|EE287000.1|EE287000
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|71428856|gb|DR809906.1|DR809906
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|211366188|gb|FL288085.1|FL288085
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|149051712|gb|EE155827.2|EE155827
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|148950086|gb|EC895621.2|EC895621
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|37374878|gb|CF623839.1|CF623839
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|60343417|gb|DN210390.1|DN210390
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|71317759|gb|DR795638.1|DR795638
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|86466746|gb|DY233116.1|DY233116
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGGEST: gi|211366190|gb|FL288087.1|FL288087
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
EST: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG GAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
genomic: TTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatct ... taaactgcagGAAGAACAGTTCAGTGATGAGCTGGAATGCCTGGTTCTCGCTAGTGACGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAGgtgagaatctgtgatttgattatgccaaaaatccaagtctctttttttgttaacagcttaatttcggggaagccagttttttgaccagttttgttacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG