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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGACTGTCACATGTGTGGGGACCCAAATTTAGTCCTTAGgtttgctttcatagagttcactgatgagggtaatatatccatatccaaccatgtttcag

Basic information

species Zea mays
transcript GRMZM2G398795_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G398795_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 4
GTTGTGGACTGTCACATGTGTGGGGACCCAAATTTAGTCCTTAGgtttgctttcatagagttcactgatgagggtaa----tatatccatatccaaccatgt-ttcag--------------------------------------
|||||||||||||  ||||||||||| || ||||  || ||| | ||||||||||||||||||||||||||||||||    |  |   |||   || ||| |  | ||                                      
GTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGgtaagtggtcgagtgataattaagcatatacttagatcaatagtcaattggttaataaactgctctgctgcag

upper sequence: GRMZM2G398795_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT4G10610.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCACATGTGTGGGGACCCAAATTTAGTCCTTAGgtttgctttcatagagttcactgatgagggtaatata----tccatatccaacc-atgtttcag--------------------------------------------------
||||| |||||||  || ||||| || || || | ||| ||||||||||||||||| |||||||||||||| ||||  ||     ||  |||  || |  | | |  |                                                  
GTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGgtatcattagtttctctatgtaatctgtttattggataatgcctgtaagtgcttggtttatggtttgtcattttgggacttgtag

upper sequence: GRMZM2G398795_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCACATGTGTGGGGACCCAAATTTAGTCCTTAGgtttgctttcatagagttcactgatgagggtaatatatccatatc-caaccatgtttcag----------------------------------------------
||||| ||||||| ||| || || |||||||| |  |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | || |     ||    |                                               
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag