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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCATTTAGTTCTTGGATTGATATCACAAATCATAAAGgtaagcattgaactgagcttatatattggtgtggttcagctttcagactattgttgaacttctgcttcgtcgaataaatattcattgtttcatcag

Basic information

species Zea mays
transcript GRMZM2G382341_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382341_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g48740.1 (Oryza sativa), 5'ss of exon 6
CCTCATTTAGTTCTTGGATTGATATCACAAATCATAAAGgtaagcattgaactgagcttatatattggtgtggttcagctttcagactattgttgaacttctgcttcgtcgaataaatattcattg-----tttcatcag
||||||||| |||||||||||||||| ||||||||||||||||   ||| |||||| || |  |||    || || |     || ||||| ||| |||| |||| || ||  ||||| ||   ||      | |||||||
CCTCATTTAATTCTTGGATTGATATCTCAAATCATAAAGgtaaatgttgcactgagttt-tgcattttgatgtttga-----catactatggttaaactcctgcctcatcatataaagatctttttgcacttatcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74239931|gb|DT647845.1|DT647845
EST:     CACAAATCATAAAG                         ATTCAACTTTTAGCTGATCTGAATCTCAAGAAGACACCGCAGCTGGTGGAG
genomic: CACAAATCATAAAGgtaagcattg ... gtttcatcagATTCAACTTTTAGCTGATCTGAATCTCAAGAAGACACCGCAGCTGGTGGAG