1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGCCTATGATCGACGTGAGTTCGAGTCAGTTCTACGGTGAAGGATACGATGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtgcatggtggtctgtgggtatgcttgttttccctaactaatggtcagatgcctactggattatgtag
species | Zea mays |
transcript | GRMZM2G167872_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACGCCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|60350531|gb|DN217504.1|DN217504
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|33097643|gb|CF057603.1|CF057603
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACGCCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|149013843|gb|EE043323.2|EE043323
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|211201981|gb|FL057813.1|FL057813
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|5922187|gb|AW055457.1|AW055457
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACGCCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|211031095|gb|FL449268.1|FL449268
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: GACAGTGAT-AGAGAAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|113689228|gb|DW846517.1|DW846517
genomic: GACAGTGATAAGAG-AATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCEST: gi|5936878|gb|AW060146.1|AW060146
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGC
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACNCCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|6095362|gb|AW120029.1|AW120029
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACEST: gi|149048836|gb|EE048336.2|EE048336
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGAC
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATTTGCTGGAGACAACATTGACGTEST: gi|78088131|gb|DV516524.1|DV516524
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|5468619|gb|AI834410.1|AI834410
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACGCCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|20507862|gb|BQ279797.1|BQ279797
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACGCCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|32859492|gb|CD999173.1|CD999173
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACGCCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|29130958|gb|CB381662.1|CB381662
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACCCCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|89755200|gb|DY685717.1|DY685717
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|29545164|gb|CB605342.1|CB605342
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|148943582|gb|EC888645.2|EC888645
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|19770313|gb|BQ035034.1|BQ035034
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACGCCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|60342920|gb|DN209893.1|DN209893
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|88754947|gb|DY539088.1|DY539088
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAG GTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGTEST: gi|32943135|gb|CF047954.1|CF047954
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
EST: TGACAGTGATAAGAGAATTCCTGACATGACTACAATCAACAAGCAGCTAG GTTGGAACCCAAAGACGCCTCTCAAGGATCTGCTGGAGACAACATTGACGT
genomic: TGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg ... gattatgtagGTTGGAACCCAAAGACACCTCTCAAGGATCTGCTGGAGACAACATTGACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCTATGATCGACGTGAGTTCGAGTCAGTTCTACGGTGAAGGATACGATGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtgcatggtggtctgtgggtatgcttgttttccctaactaatggtcagatgcctactggattatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT