1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCATCTTACTCTGGCAGTTTGCCCATTTTGCGTTGCATTTGCTGTTGTGTGGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTGgtgagtgtgaccatctgtagtattcgatgcctcccattttagctgtggcatcaactgattcgagactttgcacgttcag
species | Zea mays |
transcript | GRMZM2G165351_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTG GGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCEST: gi|67024697|gb|CO453446.1|CO453446
genomic: GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTGgtgagtgtga ... gcacgttcagGGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTC
EST: GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTG GGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCEST: gi|67017568|gb|CO446317.1|CO446317
genomic: GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTGgtgagtgtga ... gcacgttcagGGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTC
EST: GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTG GGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTC
genomic: GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTGgtgagtgtga ... gcacgttcagGGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATCTTACTCTGGCAGTTTGCCCATTTTGCGTTGCATTTGCTGTTGTGTGGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTGgtgagtgtgaccatctgtagtattcgatgcctcccattttagctgtggcatcaactgattcgagactttgcacgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA