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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgtaaaattcactgcatcattcaaacaaacatttttatgatgtttcttttcgggtccctgtcatagtatcactgcatttgtcatacataattgc...

Basic information

species Zea mays
transcript GRMZM2G159397_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32845828|gb|CD985509.1|CD985509
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGGGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32846013|gb|CD985694.1|CD985694
EST:     GAACAAATGTTTTGGGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|148949380|gb|EC894836.2|EC894836
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTTTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|76284475|gb|DV024043.1|DV024043
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|67042829|gb|CO469084.1|CO469084
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCANGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|101398167|gb|EB820957.1|EB820957
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTTGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|67010834|gb|CO439583.1|CO439583
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCANGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|71772521|gb|DR970452.1|DR970452
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32847389|gb|CD987070.1|CD987070
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|89247844|gb|DY619630.1|DY619630
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCCAG-TTATATGGCAGCATGCGTGGG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACC-AGGTTATATGGCAGCATGCGTGGG
EST: gi|76291286|gb|DV030854.1|DV030854
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTTTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|148951163|gb|EC896843.2|EC896843
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32848283|gb|CD987964.1|CD987964
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32845763|gb|CD985444.1|CD985444
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32845979|gb|CD985660.1|CD985660
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|149078371|gb|EE167144.2|EE167144
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|111145770|gb|EE258148.1|EE258148
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32867389|gb|CF007071.1|CF007071
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|78093002|gb|DV521376.1|DV521376
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|148951164|gb|EC896844.2|EC896844
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|18166498|gb|BM336337.1|BM336337
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|78093003|gb|DV521377.1|DV521377
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|18162658|gb|BM332497.1|BM332497
EST:     GTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|76284474|gb|DV024042.1|DV024042
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTTTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|71757422|gb|DR955359.1|DR955359
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|50338645|gb|CO533771.1|CO533771
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|16925533|gb|BM078601.1|BM078601
EST:     GAACAAATGTTTTGTGAAGC-AATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|67010653|gb|CO439402.1|CO439402
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|211322817|gb|FL126990.1|FL126990
EST:     GAACAAATGTTTTGTGAAGCAAATAGGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32845975|gb|CD985656.1|CD985656
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|71772520|gb|DR970451.1|DR970451
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32867990|gb|CF007672.1|CF007672
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|149098430|gb|EE184409.2|EE184409
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTTTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|149077648|gb|EE166352.2|EE166352
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|16918939|gb|BM073961.1|BM073961
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32847364|gb|CD987045.1|CD987045
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|211509211|gb|FL030116.1|FL030116
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32836271|gb|CD975949.1|CD975949
EST:     TGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: TGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|78111103|gb|DV529500.1|DV529500
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGGTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|67029631|gb|CO458380.1|CO458380
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|148995802|gb|EE035033.2|EE035033
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32845953|gb|CD985634.1|CD985634
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|213192799|gb|FM186071.1|FM186071
EST:     AATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: AATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|6918769|gb|AW400299.1|AW400299
EST:     GAACAAATGTTTTGTGGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGT-GAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|67017342|gb|CO446091.1|CO446091
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|149105409|gb|EE290921.2|EE290921
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|50338643|gb|CO533769.1|CO533769
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|76019607|gb|DT946777.1|DT946777
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAG
EST: gi|50338758|gb|CO533884.1|CO533884
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32834521|gb|CD974199.1|CD974199
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|67015240|gb|CO443989.1|CO443989
EST:     AAAAGGAAC-AATGTTTTGCGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: AAAAAGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|62525802|gb|DN828450.1|DN828450
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32866045|gb|CF005727.1|CF005727
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|213188331|gb|FM192652.1|FM192652
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGNNNAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|149081319|gb|EE170433.2|EE170433
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|76291287|gb|DV030855.1|DV030855
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|149098431|gb|EE184410.2|EE184410
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32827710|gb|CD967388.1|CD967388
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTA
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTA
EST: gi|91874357|gb|EB404314.1|EB404314
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|148931272|gb|EC874097.2|EC874097
EST:     GAACAAATGTTTTGTGAAGCACATAACTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGCGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32832923|gb|CD972601.1|CD972601
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|58030049|gb|CX725476.1|CX725476
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32847609|gb|CD987290.1|CD987290
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32867989|gb|CF007671.1|CF007671
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|148995435|gb|EE034634.2|EE034634
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|148950935|gb|EC896570.2|EC896570
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|148950936|gb|EC896571.2|EC896571
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|67019373|gb|CO448122.1|CO448122
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCANAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|67010697|gb|CO439446.1|CO439446
EST:     GAACAAATGTTTTGTGAAGCANATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|88757755|gb|DY541896.1|DY541896
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|50338492|gb|CO533618.1|CO533618
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|71757423|gb|DR955360.1|DR955360
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|149078369|gb|EE167143.2|EE167143
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32857599|gb|CD997280.1|CD997280
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|50338890|gb|CO534016.1|CO534016
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|108824286|gb|EC278294.1|EC278294
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|67026224|gb|CO454973.1|CO454973
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAA-GCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|148949381|gb|EC894837.2|EC894837
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|211053063|gb|FL461731.1|FL461731
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|32847327|gb|CD987008.1|CD987008
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|67013405|gb|CO442154.1|CO442154
EST:     GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
EST: gi|211322819|gb|FL126992.1|FL126992
EST:     AGAAAAAGGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA                         CTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG
genomic: AGAAAAAAGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 2 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 518

GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAGCGGCATTCTGAAGTGCAGCCGCAGCAGCTCAATGGCAATAACTTCTTCC


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 720

GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgta ... agatgtgcagCTGGAGGAGAGCAACCAGGTTATATGGCAGCATGCGTGGGAGCAAAGCGAGCGGCATTCTGAAGTGCAGCCGCAGCAGCTCAATGGCAATAACTTCTTCC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGAgtaagttgtaaaattcactgcatcattcaaacaaacatttttatgatgtttcttttcgggtccctgtcatagtatcactgcatttgtcatacataattgc

- - - - - - - TGAAGC
- - - - - - - - AAGCAA
- - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - -  AAGAAG