1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATGCGGGGAAACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAGgtaggatgctgtggcgagcttgctgtgctatgcttttgtcgtggcatttggttgttgaaagttgaaaccgcaaatgggggtaatcttgtttggcgtctgtgctttccag
species | Zea mays |
transcript | GRMZM2G154278_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAG GTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGACEST: gi|28910981|gb|CB331711.1|CB331711
genomic: AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGAC
EST: AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAG GTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCCAGACEST: gi|37376787|gb|CF624950.1|CF624950
genomic: AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGAC
EST: AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAG GTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGAC
genomic: AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATGCGGGGAAACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAGgtaggatgctgtggcgagcttgctgtgctatgcttttgtcgtggcatttggttgttgaaagttgaaaccgcaaatgggggtaatcttgtttggcgtctgtgctttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA