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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcctttttacaatatagcctttgcatatgcatagtgcagctcatttgttgtgttgtatgccatgttattgttctgaacattgggggtggggcc...

Basic information

species Zea mays
transcript GRMZM2G151863_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151863_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g28300.1 (Oryza sativa), 5'ss of exon 6
TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcctttttacaatata---gcctttgcatatgcatagtgcagctcatttgt---tgtgttgtatgcc--atgttattgttctgaacattgggggtggggcc
|||||||||| ||||||||||||||  || | || ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| ||   |||||||      |   |||| |   | | ||||||||| |||  || |   | |||||  ||    |||  || ||    ||||||     |      
TTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTGGAAGTCTGACCCAAAGGGATCTCAGAAGAAGGAAATGGAAGAAgtatgtcatctttttatgtaccatttgcctgtcattgttcatagtgcaactccattattcatttgttgagtgtttgatgccatggtct--aacattaaacat------

upper sequence: GRMZM2G151863_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv04s0023g00380.t01 (Vitis vinifera), 5'ss of exon 6
TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcctttttacaat-------atagcctttgcatatgcatag-tgcag----ctcatttgttgtgttgtatgccatgttattgttctgaacattgggggtggggcc
|| | ||   ||| || ||||| |||||||| |||||||| |||| ||| ||  |||||| ||||||||| ||||||||||| |||||| || |    || |  ||       | |  |  |  || || |||| || ||    || |||  || | || | | |  | ||    ||||  ||  | |          
TTCTTTATGCATTTTTCGGACTGCGGCTGCTTTATATTGCTTGGAGATCAGATTCAAAGGCATCCCAGAAAAAGGAAATGGAGGAAgtatgtttttcattaaatatcagttgcagattcactttatttgtataggtgtagaaaactgattcattttcttatctac--ttttgcctttctagactcttg----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76284808|gb|DV024376.1|DV024376
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|32801015|gb|CD953251.1|CD953251
EST:     GATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: GATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|71764493|gb|DR962430.1|DR962430
EST:     TCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|148955188|gb|EC900710.2|EC900710
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|101393554|gb|EB818709.1|EB818709
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGGTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|5124014|gb|AI745855.1|AI745855
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|78124080|gb|DV542464.1|DV542464
EST:     CATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: CATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|211094829|gb|FL156527.1|FL156527
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|71433454|gb|DR814504.1|DR814504
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|148955189|gb|EC900711.2|EC900711
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAG
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAG
EST: gi|93014798|gb|EB640318.1|EB640318
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|74242669|gb|DT650583.1|DT650583
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCANGGGAA
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAA
EST: gi|74242668|gb|DT650582.1|DT650582
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|71775510|gb|DR973388.1|DR973388
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|91875142|gb|EB405099.1|EB405099
EST:     TGCAGGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|71757648|gb|DR955585.1|DR955585
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|14243778|gb|BG841491.2|BG841491
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|71417678|gb|DR804170.1|DR804170
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|78073959|gb|DV502393.1|DV502393
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|37380324|gb|CF626963.1|CF626963
EST:     GGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: GGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|71775511|gb|DR973389.1|DR973389
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGGAATCAACCATCCGTAAGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|76291625|gb|DV031193.1|DV031193
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|16925694|gb|BM078762.1|BM078762
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|78119848|gb|DV538232.1|DV538232
EST:     CCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: CCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|76284809|gb|DV024377.1|DV024377
EST:     TGCATGGAAATCTGACTCCAA-GGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TGCATGGAAATCTGAC-CCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|78119849|gb|DV538233.1|DV538233
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|67010532|gb|CO439281.1|CO439281
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|91048229|gb|EB158647.1|EB158647
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|71770354|gb|DR968291.1|DR968291
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAAGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|211094818|gb|FL156516.1|FL156516
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCANTCCGTAGGTT
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCA-TCCGTAGGTT
EST: gi|40335107|gb|CK369177.1|CK369177
EST:     GGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: GGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|71417675|gb|DR804169.1|DR804169
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|86466280|gb|DY232651.1|DY232651
EST:     TCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|74239215|gb|DT647129.1|DT647129
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|91875143|gb|EB405100.1|EB405100
EST:     TGCATGGAAATCCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAAAAGCTTGAGTCGGGCCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TGCATGGAAATC-TGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: gi|74242876|gb|DT650790.1|DT650790
EST:     TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA                         GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 132

TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCTTTGCAAGATTCTGTACACCAATCTTTTTGGAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 88

TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCTTTGCAAGATTCTGTACACCAATCTTTTTGGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 78

TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCTTTGCAAGATTCTGTACACCAATCTTTTTGGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 124

TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCTTTGCAAGATTCTGTACACCAATCTTTTTGGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcctttttacaatatagcctttgcatatgcatagtgcagctcatttgttgtgttgtatgccatgttattgttctgaacattgggggtggggcc

- - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA