1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTAATCTTGGACCTGGAGTTTACCTAGGTGCTGTTGAGAGAGCAACATCATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAGgtaagtaagatgccaataataactgtggtcaagtttttcacactttatggcattccccactgctcattgcagtgtttactttgacttttattgtgagatatatttttcttcagggtattattgatatccttatcctcatgtcatctacgttgtaatgtggctgcag
species | Zea mays |
transcript | GRMZM2G150212_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAG AAACTTTTGTCCGAGCTGATGGTGCATTTATACCGTTTGCTGATGACTTTGEST: gi|60348163|gb|DN215136.1|DN215136
genomic: ATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAGgtaagtaaga ... gtggctgcagAAACTTTTGTCCGAGCTGATGGTGCATTTATACCGTTTGCTGATGACTTTG
EST: ATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAG AAACTTTTGTCCGAGCTGATGGTGCATTTATACCGTTTGCTGATGACTTTGEST: gi|91048015|gb|EB158433.1|EB158433
genomic: ATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAGgtaagtaaga ... gtggctgcagAAACTTTTGTCCGAGCTGATGGTGCATTTATACCGTTTGCTGATGACTTTG
EST: ATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAG AAACTTTTGTCCGAGCTGATGGTGCATTTATACCGTTTGCTGATGACTTTGEST: gi|60341697|gb|DN208670.1|DN208670
genomic: ATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAGgtaagtaaga ... gtggctgcagAAACTTTTGTCCGAGCTGATGGTGCATTTATACCGTTTGCTGATGACTTTG
EST: ATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAG AAACTTTTGTCCGAGCTGATGGTGCATTTATACCGTTTGCTGATGACTTTG
genomic: ATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAGgtaagtaaga ... gtggctgcagAAACTTTTGTCCGAGCTGATGGTGCATTTATACCGTTTGCTGATGACTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTAATCTTGGACCTGGAGTTTACCTAGGTGCTGTTGAGAGAGCAACATCATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAGgtaagtaagatgccaataataactgtggtcaagtttttcacactttatggcattccccactgctcattgcagtgtttactttgacttttattgtgagatatatttttcttcagggtattattgatatccttatcctcatgtcatctacgttgtaatgtggctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG