ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

TCCTCCTTTATTGGCCGTGCTTCAACTAAGAACAAGGGCAGAATGGCTCGTTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcgaggaagctctgtcaccggactgttttgtatgctaagtttactcattccaaaagcatctttttgattgttttgtactgtactcttgacttcag

Basic information

species	Zea mays
transcript	GRMZM2G144995_T01
intron #	6
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G144995_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g22880.1 (Oryza sativa), 5'ss of exon 6

TCCTCCTTTATTGGCCGTGCTTCAACTAAGAACAAGGGCAGAATGGCTCGTTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcgaggaagctctgtcaccggactgttttgtatgctaagt-ttactcattccaaaagcatctttttgattgttttgtactgtactcttgacttcag
|| ||||| ||||||||||||||||| |||||||| |||||||||||| | || ||||| ||||| ||||| ||||| ||||||||||| || || || ||||||||  |   || |||||  ||    ||| | ||   |||  |  | ||  | |  |||| |  |  |    | ||||| | |  |             
TCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGgttagttgcat--agttctgtttccaatttgtat-gtccactagttactgcttttgctgaaagaacttgctgccatattttggaattcag------------

upper sequence: GRMZM2G144995_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G11560.1 (Glycine max), 5'ss of exon 6

TCCTCCTTTATTGGCCGTGCTTCAACTAAGAACAAGGGCAGAATGGCTCGTTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcgaggaagctctgtcaccggactgttttgtat-gctaagtttactcattccaaaagcatctttttgattgttttgtactgtactcttgacttcag
|| || ||||| || || || ||  | || || |||||| |||| ||||| || || || |||||||| || ||||||||||| ||||||||||  || |||| |||      |  |   |    | | | || ||  |  || |||   |||||| |       |     ||||| | |||||||||  |   |       
TCTTCTTTTATCGGTCGAGCATCTGCCAAAAATAAGGGCCGAATAGCTCGCTATCTTGCTAACAAATGTTCAATTGCTTCACGGATTGACTGCTTTTCTGgtttgtttcttacatttaaattttagcaatcttatgccttacttagtac-ctcattgct----tgttaggatgattttgttgtactgtgatgcag-------

upper sequence: GRMZM2G144995_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 6

TCCTCCTTTATTGGCCGTGCTTCAACTAAGAACAAGGGCAGAATGGCTCGTTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcgaggaagctctgtcaccggactgttttgtatgctaagtttactcattccaaaagcatctttttgattgttttgtactgtactcttgacttcag
|| || |||||||| || || ||  | || || ||||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||  || |||| |||    | |  |   ||||   |   | ||  |||     | |||  |  ||     |||  ||||| | || |  || || |             
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttcttgcatat---tcactttagcatatttcatg---gctgtacatagccctttgtcatgattttg-tggtatcttaatgcag------------

upper sequence: GRMZM2G144995_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 6

TCCTCCTTTATTGGCCGTGCTTCAACTAAGAACAAGGGCAGAATGGCTCGTTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcgaggaagctctgtcaccggactgttttgtatgctaagtttactcattccaaaagcatctttttgattgttttgtactgtactcttgacttcag
|| || |||||||| || || ||  | || || ||||||||||||||||| || || |||||||||||||| ||||| ||||| ||||||||||   | |||| |||        || |   |      |      |||   | |  |   |||      |||| |||| | ||  ||| |   |||||   | | | |||
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgttt-------ctttcatattcactttagcaatatctcatggctgtacat------agca-ctttgtcatgatttagctttgtac--ctcaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|67014948|gb|CO443697.1|CO443697

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|45847107|gb|CN071050.1|CN071050

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|166430604|gb|EG252870.1|EG252870

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTC
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTC

EST: gi|31406045|gb|CD484777.1|CD484777

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|19822271|gb|BQ048295.1|BQ048295

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|6501106|gb|AW202479.1|AW202479

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|4776651|gb|AI665654.1|AI665654

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|31911265|gb|CD651838.1|CD651838

EST:     AAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: AAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|31440888|gb|CD510319.1|CD510319

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|22546099|gb|BU098420.1|BU098420

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|113861495|gb|DW981376.1|DW981376

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACC
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACC

EST: gi|166444559|gb|EG140927.1|EG140927

EST:     GGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAAGTTGCGTGAGCAAGTCGAGGAG
genomic: GGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAA-GTTGCGTGAGCAAGTCGAGGAG

EST: gi|166617390|gb|EG254577.1|EG254577

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACC
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACC

EST: gi|22819971|gb|BU500061.1|BU500061

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|22542401|gb|BU092839.1|BU092839

EST:     TACCTGGCAAAGCAAATGCTCGATTGCTTCACGCCTTGACTGCTACTCGG                         AGGCTAGCCCCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TACCTGGCAAA-CAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|22542271|gb|BU092709.1|BU092709

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|29543471|gb|CB605557.1|CB605557

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|14717533|gb|BI245183.1|BI245183

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|61117985|gb|DN558946.1|DN558946

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|61117988|gb|DN558949.1|DN558949

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|22521189|gb|BU080000.1|BU080000

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCCCCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|30306737|gb|CD001410.1|CD001410

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|32936238|gb|CF041050.1|CF041050

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTGTTTGGGCAAAAGTTGCGTGAGCAAGTGGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|31406427|gb|CD485159.1|CD485159

EST:     AAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: AAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|22546098|gb|BU098419.1|BU098419

EST:     TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGG                         AGGCTAGCCCCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA
genomic: TTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGA

EST: gi|113675216|gb|DW830053.1|DW830053

EST:     TACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTAGCTACTCGG                         AGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGC
genomic: TACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACT-GCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 500

TCCTCCTTTATTGGCCGTGCTTCAACTAAGAACAAGGGCAGAATGGCTCGTTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcga ... ttgacttcagAGGCTAGCACCTCTGTCTTTGGGCAAAAGTTGCGTGAGCAAGTCGAGGAGAGACTGGAATTCTATGACAAGGGTGTTGCGCCTCGTAAAAACCTTGATGT

Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 147