1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATGGAGATGGGTGGGGGCAGTTGGGACAAAGATAAAGTCCAAAGGGCTCTCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtatttttctcattgccccattcttttgcatttttgcacttaatgatggaatccaattttctggtgctaatagattatttatgtcaaacattag
species | Zea mays |
transcript | GRMZM2G143462_T06 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGSTGGTCAAGGGGCAEST: gi|74242202|gb|DT650116.1|DT650116
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|148995692|gb|EE034914.2|EE034914
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGEST: gi|89759371|gb|DY688230.1|DY688230
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTG
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCCATTGGTGGTCAAGGGGCAEST: gi|71764241|gb|DR962178.1|DR962178
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|32936801|gb|CF041620.1|CF041620
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|211488314|gb|FK957004.1|FK957004
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACA-CCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTNGAATTTGCTGTCCCANTTGGTGGTCAAGGGGCEST: gi|148947026|gb|EC892323.2|EC892323
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCT-GAAATTGCTGTTCCAATTGGTGGTCAAGGGGC
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGGTGGTCAAGGGGCEST: gi|89758471|gb|DY687642.1|DY687642
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGG-TGGTCAAGGGGC
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|89761592|gb|DY689541.1|DY689541
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTTCCA-TTGGTGGTCAAGGEST: gi|19272554|gb|BM888810.1|BM888810
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTT-CCAATTGGTGGTCAAGG
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGTGCAEST: gi|211394219|gb|FL229513.1|FL229513
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGNTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|211394220|gb|FL229514.1|FL229514
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|78111156|gb|DV529553.1|DV529553
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT --TA----A----CAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|148999208|gb|EE036127.2|EE036127
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|22489727|gb|BU049650.1|BU049650
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|93280956|gb|EB673220.1|EB673220
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTTCCA-TTGGTGGGTCA-GGGGEST: gi|2615440|gb|AA661449.1|AA661449
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTT-CCAATTGGTGG-TCAAGGGG
EST: GCCGCTTACAACAACCCCGAANGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGNTGTTCCAATTGGTGGTCAANGGGCAEST: gi|149095756|gb|EE181396.2|EE181396
genomic: GCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|19822693|gb|BQ048717.1|BQ048717
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCAEST: gi|76912415|gb|DV164721.1|DV164721
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGTGGTCAAGGGGCA
EST: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCT GGTATTCCAGTAACAGCTGAAATTGCTGTTCCNATTGGT
genomic: TCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtattt ... caaacattagGGTATTCCAGTAACAGCTGAAATTGCTGTTCCAATTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGAGATGGGTGGGGGCAGTTGGGACAAAGATAAAGTCCAAAGGGCTCTCCGTGCCGCTTACAACAACCCCGAACGTGCTGTTGAATACCTCTACTCTgtatgtatttttctcattgccccattcttttgcatttttgcacttaatgatggaatccaattttctggtgctaatagattatttatgtcaaacattag
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