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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAGgtctgtaatgctaactttagaaccacttttacgtcaaacagattttgtagttataaacttcttgcagtctgatgagttaattaacgattatggttgttgacttttcag

Basic information

species Zea mays
transcript GRMZM2G133359_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133359_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g59920.1 (Oryza sativa), 5'ss of exon 7
GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAGgtctgtaatgctaactttagaaccacttttacgtcaaacagattttgtagttataaacttcttgcagtctgatgagttaattaacgattatggttgttgacttttcag
|||| |||||||| ||||||||||| ||| || ||||||| |||||||||||| | ||||  |||||||      ||||||  |   | | |      |  | |  ||   |  ||||      ||| | ||||   ||||| || |  |   | |||
GTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGgtccgcaatggcaactttaattgtccttttatttttgaaaaa------aaatgttgacagttgacagttcctgcagtgacttaa---ttatgattttgaaaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32909844|gb|CF014656.1|CF014656
EST:     CCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAG                         GTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
genomic: CCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAGgtctgtaatg ... gacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
EST: gi|32909943|gb|CF014755.1|CF014755
EST:     GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAG                         GTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
genomic: GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAGgtctgtaatg ... gacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
EST: gi|16925875|gb|BM078943.1|BM078943
EST:     TCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAG                         GTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
genomic: TCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAGgtctgtaatg ... gacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
EST: gi|88748683|gb|DY532824.1|DY532824
EST:     GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAG                         GTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
genomic: GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAGgtctgtaatg ... gacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG