1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATTTTGAGCAACCATCCTTTACAGAAGCGCATATAAAAGAACTCATCTGGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattctttttgtttgtcacttgggaatggcttgcccaacataacaaatcacctaaacgagtatagtttgtcttaacaatctagatgaaggcggtt...
species | Zea mays |
transcript | GRMZM2G127141_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GAT-ATTGAGGTTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGEST: gi|76010905|gb|DT938075.1|DT938075
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGAT-GAG-TT-ATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCG
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|149042023|gb|EE046997.2|EE046997
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|60356919|gb|DN223892.1|DN223892
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|78023551|gb|DV491938.1|DV491938
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|101387048|gb|EB815541.1|EB815541
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|211219872|gb|FL299417.1|FL299417
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|14883740|gb|BI273525.1|BI273525
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|74241511|gb|DT649425.1|DT649425
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|91876834|gb|EB406791.1|EB406791
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|14717616|gb|BI245266.1|BI245266
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTTTAGGTCCAGCGGACEST: gi|60399358|gb|DN232172.1|DN232172
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|71771177|gb|DR969114.1|DR969114
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|110223138|gb|EC905036.1|EC905036
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATTTGCTAGAGGCATATGAAGATCTTTAGGTCCAGCGGACEST: gi|88755737|gb|DY539878.1|DY539878
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTTTAGGTCCAGCGGACEST: gi|110494997|gb|EE014551.1|EE014551
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATTTGCTAGAGGCATATGAAGATCTTTAGGTCCAGCGGACEST: gi|76917704|gb|DV166966.1|DV166966
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|28986239|gb|CB351038.1|CB351038
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|60359685|gb|DN226658.1|DN226658
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|78091136|gb|DV519510.1|DV519510
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGACEST: gi|17932520|gb|BM269480.1|BM269480
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
EST: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAG GATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
genomic: GGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattc ... gcgagcgcagGATGATGAGTTATCTGCTAGAGGCATATGAAGATCTCTAGGTCCAGCGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTTTGAGCAACCATCCTTTACAGAAGCGCATATAAAAGAACTCATCTGGAGGGAATCTTTAGCATTTAACCCAGAGCCTCCCTACTAATATCAAAAGgtctgtattctttttgtttgtcacttgggaatggcttgcccaacataacaaatcacctaaacgagtatagtttgtcttaacaatctagatgaaggcggtt
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