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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatatatttgaatatttctttcatcctttaattattcctacgttatttgacacacatataatatcagtgcttcaaaacactcattgctagagtgtactattattttcag

Basic information

species Zea mays
transcript GRMZM2G121262_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121262_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g46270.1 (Oryza sativa), 5'ss of exon 5
TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatatatttgaatatttctttcatcctttaattattcctac----gttatttgacacacatataatatcagtgcttcaaaacactcattgctag-agtgtactattattttcag
 ||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||| |||        |||||||||||  ||| ||  | |    | || ||   ||   |   |||||     ||      |     || |   |   |   ||  | | |||
ATATGTTTTTGACGGCAAGCCTCCTGATCTGAAGAAACAAGAGCTCGCAAAAAGgcatgatatgttt--------ctttcatccttagattgtttttcctgctgctacttataacttgtcctatatcc-cattttgggctatgatctgtttctaacatggcatgttctgcag

upper sequence: GRMZM2G121262_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G28200.1 (Glycine max), 5'ss of exon 5
TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcat--gatatatttgaatatttctttcatcctttaattattcctacgttatttgacacacat---ataatatcagtgctt-caaaacactcattgctagagtgt-----actattatt--ttcag
 |||||||||||||| ||||| |||||| ||||||||||||||||||| ||| || ||   |||| ||    ||||||||      | ||||| ||| |  |   |  |       |   || |||| | | |||   |||  ||      ||  |  |     ||||  |||  | |||
ATATGTTTTTGATGGGAAGCCACCTGATTTGAAGAAACAAGAGCTTGCCAAACGgtatttaatattttctgttatttcttgagagttctaatttttcttttgggttgggggttttgttttattatataattacttatcaaaagcttgccaataatgcttttcacactaaaattgatacag

upper sequence: GRMZM2G121262_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G22190.3 (Glycine max), 5'ss of exon 5
TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatatatttgaatatttctttcatcctttaattattcctacgttatttgacacacatataatatcagtgcttcaaaac----actcattgctagagtgt--actattattttcag----------------
 |||||||||||||| ||||| || ||| |||||||||||||||| || ||| || ||  ||| |  || | ||| ||   |     | || |   |   || ||||         |  ||| | |  |  | ||     ||| ||    ||  |||   | ||  ||||||                 
ATATGTTTTTGATGGGAAGCCACCAGATTTGAAGAAACAAGAGCTGGCCAAACGgtattttatgtg-gattttttgttattttagagagttctattttatttttttggagtgagggtgttat-attattatagaattgttacttatcaaaagtttgtcagcaatggttttcacactaaaattgatacag

upper sequence: GRMZM2G121262_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 5
TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatatatttgaatatttctttcatcctttaattattcctacgttatttgacacacatataatatcagtgcttcaaaacactcattgctagagtgtactattattttcag
||||||||||||||| |||||||| ||| |||| || ||||||||||| ||| || ||  | |  |   | | | |   |||   ||    |||  |   | |  |||   |   ||  ||| || ||| |     ||    |  |  |    ||  ||  |  |||
TTATGTTTTTGATGGGAAGCCTCCAGATTTGAAAAAGCAAGAGCTTGCAAAACGgtatc-tttcctatcacagtgcccccatttattctgcatttttttttaacatgat-tatgaatc-tataagggct-cgtttgacatgcttttgtaccacacccttggtg-cag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211167737|gb|FL381616.1|FL381616
EST:     TTTTTGATGGCAAGCCTCCTGATATGAAGAAAACAAGAACTTGCTAAAAG                         ATAACTCAAAAA
genomic: TTTTTGATGGCAAGCCTCCTGATATGAAGAAA-CAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATA-CTCAAAAA
EST: gi|88749646|gb|DY533787.1|DY533787
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211100122|gb|FL400844.1|FL400844
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAA-GATCTGACTGAGGCAGTAGAGGT
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAGGT
EST: gi|211425800|gb|FL370226.1|FL370226
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
EST: gi|28568845|gb|CB280720.1|CB280720
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|148983038|gb|EE028944.2|EE028944
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211012301|gb|FL429470.1|FL429470
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAG
EST: gi|26558947|gb|CA831182.1|CA831182
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|30087247|gb|CB885455.1|CB885455
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211017547|gb|FL416072.1|FL416072
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
EST: gi|211373800|gb|FL383593.1|FL383593
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGG
EST: gi|211381883|gb|FL378666.1|FL378666
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGA
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGA
EST: gi|50328745|gb|CO523871.1|CO523871
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|148945123|gb|EC890320.2|EC890320
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211150723|gb|FL424954.1|FL424954
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCA-CCAAAGATCTGACTGAGGCAGTAGAGGT
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAGGT
EST: gi|78117503|gb|DV535890.1|DV535890
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|5566733|gb|AI881599.1|AI881599
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|148985935|gb|EE029848.2|EE029848
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|89763728|gb|DY690807.1|DY690807
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|22473079|gb|BU037559.1|BU037559
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211042507|gb|FL401127.1|FL401127
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211212604|gb|FL411845.1|FL411845
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGA
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGA
EST: gi|211025441|gb|FL424759.1|FL424759
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGA
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGA
EST: gi|31405508|gb|CD484240.1|CD484240
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|18661475|gb|BM501417.1|BM501417
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211153107|gb|FL147726.1|FL147726
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211245220|gb|FL396976.1|FL396976
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211330557|gb|FL419745.1|FL419745
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
EST: gi|87156101|gb|DY400890.1|DY400890
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211437408|gb|FL427299.1|FL427299
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|71444731|gb|DR825781.1|DR825781
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211159822|gb|FL401300.1|FL401300
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGC
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGC
EST: gi|211154932|gb|FL392729.1|FL392729
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
EST: gi|211063788|gb|FL421781.1|FL421781
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGAWTGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGA-TGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211299165|gb|FL411033.1|FL411033
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|74235361|gb|DT643275.1|DT643275
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211428990|gb|FL402811.1|FL402811
EST:     GTTTTTGATGGCMAGCCTCCTGATATGAAGAAACMAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATG
EST: gi|211017548|gb|FL416073.1|FL416073
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGA
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGA
EST: gi|211500136|gb|FL426014.1|FL426014
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|9952839|gb|BE639422.1|BE639422
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211210052|gb|FL412299.1|FL412299
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACC
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACC
EST: gi|211431955|gb|FL418480.1|FL418480
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211212177|gb|FL397460.1|FL397460
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211413681|gb|FL415020.1|FL415020
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAGGT
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAGGT
EST: gi|211269215|gb|FL410577.1|FL410577
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211149118|gb|FL417449.1|FL417449
EST:     TTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAKAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: TTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAA-AGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|93014006|gb|EB639526.1|EB639526
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211245266|gb|FL399179.1|FL399179
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211496668|gb|FL401564.1|FL401564
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACWAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAGG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAGG
EST: gi|211467040|gb|FL427724.1|FL427724
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
EST: gi|76018920|gb|DT946090.1|DT946090
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|32907157|gb|CF011970.1|CF011970
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|91054792|gb|EB165210.1|EB165210
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211518748|gb|FL408140.1|FL408140
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211095527|gb|FL420438.1|FL420438
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCMAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGC
EST: gi|211541786|gb|FL372764.1|FL372764
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGC
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGC
EST: gi|211017549|gb|FL416074.1|FL416074
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211092307|gb|FL381165.1|FL381165
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG
EST: gi|211109386|gb|FL406905.1|FL406905
EST:     GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAAAAG                         ATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAGGT
genomic: GTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 296

TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 66

TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 112

TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 46

TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatata ... ttattttcagATACTCAAAAAGAGATGATGCAACCAAAGATCTGACTGAGGCAGTAGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAGgcatgatatatttgaatatttctttcatcctttaattattcctacgttatttgacacacatataatatcagtgcttcaaaacactcattgctagagtgtactattattttcag

- - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - GAGCTT