1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCATACATTCTCAATGATTATTGCTTTTAATGCATATGACGAGGGAAAGAAAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaaccatgccttattgtttgtgttgggttgaaacataatgaacttgatgcttgagctgattttgtttcaattttcacgagtttctctattttgttt...
species | Zea mays |
transcript | GRMZM2G102021_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|67020084|gb|CO448833.1|CO448833
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|50328020|gb|CO523146.1|CO523146
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|86468508|gb|DY234878.1|DY234878
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|211072382|gb|FL433877.1|FL433877
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|166698820|gb|EG068824.1|EG068824
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGEST: gi|22818907|gb|BU498997.1|BU498997
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|211105116|gb|FL057782.1|FL057782
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|149048871|gb|EE048372.2|EE048372
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|87155707|gb|DY400496.1|DY400496
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|148946111|gb|EC891405.2|EC891405
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|91876597|gb|EB406554.1|EB406554
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|113607274|gb|DW776952.1|DW776952
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: ATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|113703076|gb|EE680580.1|EE680580
genomic: ATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|37395770|gb|CF635168.1|CF635168
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|33091816|gb|CF051810.1|CF051810
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|211503758|gb|FL479708.1|FL479708
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|40336955|gb|CK371025.1|CK371025
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGEST: gi|148946112|gb|EC891406.2|EC891406
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
EST: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATG ACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
genomic: AAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaacca ... ttcatttcagACACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATACATTCTCAATGATTATTGCTTTTAATGCATATGACGAGGGAAAGAAAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGgtaagaaccatgccttattgtttgtgttgggttgaaacataatgaacttgatgcttgagctgattttgtttcaattttcacgagtttctctattttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC