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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTACTATTTCTGTTTTACTCGAAGACATACCAGGGGGGAGGTTGGGTCCGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattactcagtcagaagttgcattttaatgccagttttctttctaaatataacttctattgtaatcaacatacag

Basic information

species Zea mays
transcript GRMZM2G098815_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098815_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g09610.1 (Oryza sativa), 5'ss of exon 6
TACTACTATTTCTGTTTTACTCGAAGACATACCAGGGGGGAGGTTGGGTCCGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaa-------ttactcagtcagaagttgcattttaatgccagttttctttctaaatataacttctattgtaatcaacatacag
|  | || || ||| ||||||| |||| | | || |||| || ||||||||||||||||| || |||||||||||||||||||   || ||||||| ||||||| |       |||  ||| ||  |||||||| |   | || ||| | ||||||| |  ||||    |||||   |||||||||
TTTTGCTCTTGCTGGTTTACTCCAAGAAAAATCATGGGGAAGATTGGGTCCGCAATGGATACGACCCACACCCCCAAGACTTCACATACTTGATGGAGAGgtaacagagtgtcttagccagccaagagttgcatctgtgtacccgttctgtttctaagtgcaactgtgcttgtatcgaacatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438169|gb|DR819219.1|DR819219
EST:     CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG                         CTACAATGGCTGAACCCTGANCA-TAACCACGAGCTATTATGGGATTATAG
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGA-CAATAACCACGAGCTATTATGGGATTATAG
EST: gi|71765717|gb|DR963654.1|DR963654
EST:     CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG                         CTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGC
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGC
EST: gi|148952745|gb|EC898726.2|EC898726
EST:     CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG                         CTACAATGGCTGAACCCTG
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTG
EST: gi|71438316|gb|DR819366.1|DR819366
EST:     CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG                         CTACAATGGCTGA
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGA
EST: gi|74245464|gb|DT653378.1|DT653378
EST:     CGCA-TGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG                         CTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGC
genomic: -GCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGC
EST: gi|71433709|gb|DR814759.1|DR814759
EST:     CGCAATGGATTCGGCCCACACCCTCAAGACTTCTTTTATTTGATGGGGAG                         CTACAATGGCTGAACCCTGACAATAAACACGAGCTATTATGGGATTATAGC
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGC
EST: gi|76926415|gb|DV170849.1|DV170849
EST:     CGCAATGGATTCGGCCCAC-CCCCCAAGACTTCCTTTATTTGATGGGGAG                         CTACAATGGCTGAACCCTGA
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGA
EST: gi|91873215|gb|EB403172.1|EB403172
EST:     GCAATGGATTCGGCCCACACCCCTCA-GACTTCCTTTATTTGATGGGGAG                         CTACAATGGCTGAACCCTGACCATATC-ACGAGCTAT
genomic: GCAATGGATTCGGCCCACACCCC-CAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTAT
EST: gi|148960798|gb|EE011460.2|EE011460
EST:     CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG                         CTACAATGGCTGAACCCTG
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTG