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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTCCGGAAAATAAAGCTATTTGGGTACAGAGTGTTTCTTATTTATGCGgtaagattttctcttatgaagttatgatgttgattgaatgtgtggatctgtgctgcatgctggttgatatgagaggctaatttctgaactactgatgctgcctctttag

Basic information

species Zea mays
transcript GRMZM2G095611_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095611_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g63870.1 (Oryza sativa), 5'ss of exon 4
TACCTCCGGAAAATAAAGCTATTTGGGTACAGAGTGTTTCTTATTTATGCGgtaagattttctcttatgaagttatgatgttgattgaatgtgtggatctgtgctgcatgctggt-tgat-atgagaggctaatttctgaactactgatgctgcctctttag
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TACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCGgtaagatttgggctaat--agttat----ttgagctaatacctccatctatgctagtcattagtgtgattatgcaattctaattgctgaacttttggtgctgccttcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443802|gb|DR824852.1|DR824852
EST:     ACCTCCGGAAAATAAAGCTATTTGGGTACAGAGTGTTTCTTATTTATGCG                         GTTCCTCTTGGATTAGGAATCACATGGGCTGTTGCTTTCGTTCTCACAGCA
genomic: ACCTCCGGAAAATAAAGCTATTTGGGTACAGAGTGTTTCTTATTTATGCGgtaagatttt ... gcctctttagGTTCCTCTTGGATTAGGAATCACATGGGCTGTTGCTTTCGTTCTCACAGCA