1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCCCACTCTTCTCAGAGCTGGAAGAGGGATGACACTGTGGGACAAAGCCGGTGCTGTACCTGCAGAGAAGCTGGAGCTCTTCTCGTACGAGAATAATCCCgtgagagatcgctgctcagctctcattgttgccatgttacaagcttgctgcatcgttcgatctcttattatggtggtgccctctccccttcgcacgttttggatccag
species | Zea mays |
transcript | GRMZM2G086971_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGCTGTACCTGCAGAGAAGCTGGAGCTCTTCTCGTACGAGAATAATCCC TGTGCAAGGATAGTTCGAGAGGCTCTCTGTGAACTGGAGCTTCCTTATGTTEST: gi|78125582|gb|DV543966.1|DV543966
genomic: GTGCTGTACCTGCAGAGAAGCTGGAGCTCTTCTCGTACGAGAATAATCCCgtgagagatc ... ttggatccagTGTGCAAGGATAGTTCGAGAGGCTCTCTGTGAACTGGAGCTTCCTTATGTT
EST: GTGCTGTACCTGCAGAGAAGCTGGAGCTCTTTTCGTACGAGAATAATCCC TGTGCAAGGATAGTTCGAGAGGCTTTTTGTGAACTGGAGCTTCCTTATGTTEST: gi|76012728|gb|DT939898.1|DT939898
genomic: GTGCTGTACCTGCAGAGAAGCTGGAGCTCTTCTCGTACGAGAATAATCCCgtgagagatc ... ttggatccagTGTGCAAGGATAGTTCGAGAGGCTCTCTGTGAACTGGAGCTTCCTTATGTT
EST: GTGCTGTACCTGCAGAGAAGCTGGAGCTCTTTTCGTACGAGAATAATCCC TGTGCAAGGATAGTTCGAGAGGCTCTCTGTGAACTGGAGCTTCCTTATGTTEST: gi|32938253|gb|CF043072.1|CF043072
genomic: GTGCTGTACCTGCAGAGAAGCTGGAGCTCTTCTCGTACGAGAATAATCCCgtgagagatc ... ttggatccagTGTGCAAGGATAGTTCGAGAGGCTCTCTGTGAACTGGAGCTTCCTTATGTT
EST: TACGAGAATAATCCC TGTGCAAGGATAGTTCGAGAGGCTCTCTGTGAACTGGAGCTTCCTTATGTT
genomic: TACGAGAATAATCCCgtgagagatc ... ttggatccagTGTGCAAGGATAGTTCGAGAGGCTCTCTGTGAACTGGAGCTTCCTTATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCACTCTTCTCAGAGCTGGAAGAGGGATGACACTGTGGGACAAAGCCGGTGCTGTACCTGCAGAGAAGCTGGAGCTCTTCTCGTACGAGAATAATCCCgtgagagatcgctgctcagctctcattgttgccatgttacaagcttgctgcatcgttcgatctcttattatggtggtgccctctccccttcgcacgttttggatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT