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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttcatcactgcagctatgtatggcttagaccagcaaatgtggtcttttggtgatgagtattttcctagttaatatgctgtccgcagattttgt...

Basic information

species Zea mays
transcript GRMZM2G073415_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073415_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g36110.2 (Oryza sativa), 5'ss of exon 5
ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttcatcactgcagctatgtatggcttagaccagcaaatgtggtcttttggtgatgagtattttcctagttaatatgctgtccgcagattttgt--------
||||||||||||| ||||| |||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| || ||| | ||||||||| || || ||   |         | ||   ||||      |||    ||||   |   | ||  |   |||   ||      |  |  |||||             
ATCAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGTCATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGgtatttgtttatacatat-----catgtgctctaga---atgaatagaatcttgatggtttcagcctacacctgcctagatgattacctccagatgcctcattcatgt

upper sequence: GRMZM2G073415_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA06G15360.2 (Glycine max), 5'ss of exon 5
ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttcatcactgcagctatgtatggcttagaccagcaaatgtggtcttttggtgatgagtattttcctagttaatatgctgtccgcagattttgt--------
|||||||||| || || || ||||| |||||||||||  |||| || |||||||||||||||||||||||||| || ||||||||  |   ||| |||||||  | |    ||||  |||||  ||   || | | | |   ||  |  ||    |  |   ||||||  ||   |||   || ||  ||  || | |        
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCGTTTGGATTTATTACATCAACTGTTACTCTACAGgtaccctgt----actgtcgctataaatttgtttgccaaccttgtgatggtttcctttctt---tattttgataacaaattaact-tcaacaatttctattattattt

upper sequence: GRMZM2G073415_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 5
ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtacttttt--catcactgcagctatgtatggcttagaccagcaaatgtggtct---tttg-gtgatgagtattttcctagttaatatgctgtccgcagattttgt
|||||||||| || || || ||||| |||||||||||  |||| || ||||||||||||||||| ||||| || || ||||||||  |  |||| |||||||| | |    |||||  |  | ||| |  |     |      || | |  |   | || |||||||| |    | ||    | |   || |  || | |    
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgtagtgtcactataaatttgtttaccaacctcttatttatattgattaaatatgtgtgatgagcaaccacataa--gagaacttgacatcacact----

upper sequence: GRMZM2G073415_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv07s0031g02010.t01 (Vitis vinifera), 5'ss of exon 5
ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttcatcactgcagctatgtat---ggcttagaccagcaaatgtggtcttttggtgatgagtattttcctagttaatatgctgtccgcagattttgt
| |||||||| || || || ||||| ||||| || ||  ||||||| ||||||||||||||||| ||||| || || ||||||||  |  | ||||||||||||||  || |    |  | | |        || |  ||     | || ||   |     ||||    ||  |  |   | |  | | |  |  |     
ACCAAAATACCACTGCTTTTAAAGAGGTAGCTATCATCCGTCATCCACGTGTTGGTGAATATGCATTTGGTTTTATTACATCAACAGTAATCCTTCAGgtacttttagataatatgatttctcttcttgaaatttgttcaagctttttgctcaagtcagtttgagaggatttttgttcctttttttattcatatgtga---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149096886|gb|EE182683.2|EE182683
EST:     CAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAG        
genomic: GTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttc ... tgcattgcagA
EST: gi|67012407|gb|CO441156.1|CO441156
EST:     CAATTATTAGTCATCCCCGTGTTGGTGAATATGCATTTGGATTCATAACATCAACCATGGTTCTTCAG        
genomic: GTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttc ... tgcattgcagA
EST: gi|60341304|gb|DN208277.1|DN208277
EST:     CAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAG        
genomic: GTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttc ... tgcattgcagA
EST: gi|76291080|gb|DV030648.1|DV030648
EST:     CAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAG        
genomic: GTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttc ... tgcattgcagA
EST: gi|91055827|gb|EB166245.1|EB166245
EST:     CAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAG        
genomic: GTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttc ... tgcattgcagA
EST: gi|149104749|gb|EE290203.2|EE290203
EST:     CAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAG        
genomic: GTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttc ... tgcattgcagA
EST: gi|60347004|gb|DN213977.1|DN213977
EST:     CAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAG        
genomic: GTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttc ... tgcattgcagA
EST: gi|78121574|gb|DV539958.1|DV539958
EST:     GATTCATAACATCAACCATGGTTCTTCAG                         ACAGACAAAGGTGATGAAGAATTGTGTAGTGTTTATGTGCCAACCAATCAT
genomic: GATTCATAACATCAACCATGGTTCTTCAGgtactttttc ... tgcattgcagACAGACAAAGGTGATGAAGAATTGTGTAGTGTTTATGTGCCAACCAATCAT
EST: gi|211119697|gb|FL001617.1|FL001617
EST:     CAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAG        
genomic: GTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttc ... tgcattgcagA