1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCTGGAGCCCTTCTTCAGCGCAGCTGCTACTCAGTTTATCCTTGGACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatcctcagttcgatcatcatctcataattaatcctaatgctctagctaagcgatcacatgaaattacctgccag
species | Zea mays |
transcript | GRMZM2G070605_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|76914837|gb|DV165713.1|DV165713
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|149013546|gb|EE043037.2|EE043037
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|32941843|gb|CF046662.1|CF046662
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|32925288|gb|CF030100.1|CF030100
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|149075192|gb|EE163691.2|EE163691
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|148986357|gb|EE030094.2|EE030094
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGEST: gi|211519067|gb|FL311546.1|FL311546
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTG
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTGGTCATTG GTGTTTCAATGGCATCCCTTACTGAGCTTTCATTCAACTGGACTGGCTTCAEST: gi|116820056|gb|EC863241.1|EC863241
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|149112153|gb|EE191267.2|EE191267
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|32925201|gb|CF030013.1|CF030013
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|91050012|gb|EB160430.1|EB160430
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|149026859|gb|EE046212.2|EE046212
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTTCA-CTGGACTGGCTTCEST: gi|149097452|gb|EE183315.2|EE183315
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATT-CAACTGGACTGGCTTC
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCAEST: gi|71766326|gb|DR964263.1|DR964263
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTTCA-CTGGACTGGCTTCEST: gi|78077772|gb|DV506204.1|DV506204
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATT-CAACTGGACTGGCTTC
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCC GTGTTTCAATGGEST: gi|32925598|gb|CF030410.1|CF030410
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGG
EST: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCG GTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
genomic: ACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatc ... tacctgccagGTGTTTCAATGGCATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGGAGCCCTTCTTCAGCGCAGCTGCTACTCAGTTTATCCTTGGACAGCAAGTTCCCTTCTCTCTGTGGCTTTCTCTTGCCCCTGTTGTCATCGgtatgtaatcctcagttcgatcatcatctcataattaatcctaatgctctagctaagcgatcacatgaaattacctgccag
- - - - - - - - - - - - - - - - - - - - - - - - AGCAAG