1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGACGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtatacacatttttgctgtgagtgcatttgaaatggtactatatataatcattattagagcagtgcatagtaagggtagcagggccgggcctaagcacgtgcaacaggtgctattttggaatggatttctaagtagtctactaatgatttgggttttaattttgtcag
species | Zea mays |
transcript | GRMZM2G070514_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCAGGGAGTGAAATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG GAGGGAGGTCCTAGAGGTAGTAAGTCACTTGTTTACEST: gi|166526046|gb|EG213118.1|EG213118
genomic: AGAAGCAGGGAGTG--ATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... attttgtcagGAGGGAGGTCCTAGAGGTAGTAAGTCACTTGTTTAC
EST: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG GAGGGAGGTCCTAGAGGTAGTAAGTCACTTGTTTACEST: gi|113774900|gb|DW897733.1|DW897733
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... attttgtcagGAGGGAGGTCCTAGAGGTAGTAAGTCACTTGTTTAC
EST: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG GAGGGAGGTCCTAGAGGTAGTAAGTCACTTGTTTACTCCATGAEST: gi|166431368|gb|EG277628.1|EG277628
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... attttgtcagGAGGGAGGTCCTAGAGGTAGTAAGTCACTTGTTTACTCCATGA
EST: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG GAGGGAGGTCCTAGAGGTAG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... attttgtcagGAGGGAGGTCCTAGAGGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGACGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtatacacatttttgctgtgagtgcatttgaaatggtactatatataatcattattagagcagtgcatagtaagggtagcagggccgggcctaagcacgtgcaacaggtgctattttggaatggatttctaagtagtctactaatgatttgggttttaattttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG