1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCAATGAAGCAACTGAAGTTGGAGCTGAGTGCCCATAAATCTCACATCGACATGTTAGGTAGCAGGTTGGAGCAGGTTACTAATGACGTGCATTCGCAGTgtaatgttcttaatttcccttctacgtttaagattagcccttcttctgaaatagagtctcttatcccatctgatggcaattcttcctggtcccttgtacag
species | Zea mays |
transcript | GRMZM2G067350_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CATGTTAGGTAGCAGGTTGGAGCAGGTTACTAATGACGTGCATTCGCAGT ATAAAAATGAGATCCAGGATTTGAGGGATGTGGTTTCTGTTGAACAAGAGGEST: gi|149016977|gb|EE045644.2|EE045644
genomic: CATGTTAGGTAGCAGGTTGGAGCAGGTTACTAATGACGTGCATTCGCAGTgtaatgttct ... ccttgtacagATAAAAATGAGATCCAGGATTTGAGGGATGTGGTTTCTGTTGAACAAGAGG
EST: CATGTTAGGTAGCAGGTTGGAGCAGGTTACTAATGACGTGCATTCGCAGT ATAAAAATGAGATCCAGGATTTGAGGGATGTGGTTTCTGTTGAACAAGAGGEST: gi|211056573|gb|FL481095.1|FL481095
genomic: CATGTTAGGTAGCAGGTTGGAGCAGGTTACTAATGACGTGCATTCGCAGTgtaatgttct ... ccttgtacagATAAAAATGAGATCCAGGATTTGAGGGATGTGGTTTCTGTTGAACAAGAGG
EST: CATGTTAGGTAGCAGGTTGGAGCAGGTTACTGATGGCGTGCATTCGCAGT ATAAAAATGAGATCCAGGATTTGAGGGATGTGGTTTCTGTTGAACAAGAGGEST: gi|149016976|gb|EE154303.2|EE154303
genomic: CATGTTAGGTAGCAGGTTGGAGCAGGTTACTAATGACGTGCATTCGCAGTgtaatgttct ... ccttgtacagATAAAAATGAGATCCAGGATTTGAGGGATGTGGTTTCTGTTGAACAAGAGG
EST: AATGACGGGCATTCGCAGT ATAAAAATGAGATCCAGGATTTGAGGGATGTGGTTTCTGTTGAACAAGAGG
genomic: AATGACGTGCATTCGCAGTgtaatgttct ... ccttgtacagATAAAAATGAGATCCAGGATTTGAGGGATGTGGTTTCTGTTGAACAAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATGAAGCAACTGAAGTTGGAGCTGAGTGCCCATAAATCTCACATCGACATGTTAGGTAGCAGGTTGGAGCAGGTTACTAATGACGTGCATTCGCAGTgtaatgttcttaatttcccttctacgtttaagattagcccttcttctgaaatagagtctcttatcccatctgatggcaattcttcctggtcccttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG