1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttcatcatgctattgattcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaattgcag
species | Zea mays |
transcript | GRMZM2G044027_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG GATTTTGNTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|149097834|gb|EE183762.2|EE183762
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|32841175|gb|CD980856.1|CD980856
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|14206834|gb|BG840512.1|BG840512
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|32909997|gb|CF014809.1|CF014809
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|6194647|gb|AW146751.1|AW146751
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGNGATCCACTTGAGCATCCEST: gi|32841101|gb|CD980782.1|CD980782
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|6020952|gb|AW065880.1|AW065880
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCCEST: gi|211032180|gb|FL277400.1|FL277400
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCCEST: gi|32850262|gb|CD989943.1|CD989943
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: TACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|32850632|gb|CD990313.1|CD990313
genomic: TACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|32850126|gb|CD989807.1|CD989807
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|32850554|gb|CD990235.1|CD990235
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|22473192|gb|BU037672.1|BU037672
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTCGAGCATCCEST: gi|213173372|gb|FM186537.1|FM186537
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|26558105|gb|CA830340.1|CA830340
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTEST: gi|32850616|gb|CD990297.1|CD990297
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGT
EST: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|148945878|gb|EC891170.2|EC891170
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|32840343|gb|CD980024.1|CD980024
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|32840626|gb|CD980307.1|CD980307
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|32849033|gb|CD988714.1|CD988714
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATTCGCTTGAGCATCCEST: gi|67016223|gb|CO444972.1|CO444972
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCCEST: gi|67013235|gb|CO441984.1|CO441984
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCCEST: gi|21987903|gb|BQ779431.1|BQ779431
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCCEST: gi|32165003|gb|CD670321.1|CD670321
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCEST: gi|148951041|gb|EC896695.2|EC896695
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttcatcatgctattgattcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaattgcag
- - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT