1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGCAGTGATGAAGAAGAGGAAGAAGAAGCTGATGTCCGTCCTAATTCAGGGAGTGATGAGGACCTAAGTGAAGAAGACACCATGGAGATCGATGAGGAGgtgagatgaagtctttatttggattgttacaggctttttcctttttttcttttatcctaaacagtaggtaaaaggattcacccatgtagttgctttctctgcactctacgctctggatccctttgtaagcatatttgtggatgtttgcatggcag
species | Zea mays |
transcript | GRMZM2G017334_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGAGTGATGAGGACCTAAGTGAAGAAGACACCATGGAGATCGATGAGGAG ATGGAAGGGTCTGTGGACGAGGACTGCAACAGGTCTGATGAGGAATATGACEST: gi|71444658|gb|DR825708.1|DR825708
genomic: GGAGTGATGAGGACCTAAGTGAAGAAGACACCATGGAGATCGATGAGGAGgtgagatgaa ... tgcatggcagATGGAAGGGTCTGTGGACGAGGACTGCAACAGGTCTGATGAGGAATATGAC
EST: GGAGTGATGAGGACCTAAGTGAAGAAGACACCATGGAGATCGATGAGGAG ATGGAAGGGTCTGTGGACGAGGACTGCAACAGGTCTGATGAGGAATATGACEST: gi|31356797|gb|CD441154.1|CD441154
genomic: GGAGTGATGAGGACCTAAGTGAAGAAGACACCATGGAGATCGATGAGGAGgtgagatgaa ... tgcatggcagATGGAAGGGTCTGTGGACGAGGACTGCAACAGGTCTGATGAGGAATATGAC
EST: GGAGTGATGAGGCCCTNAGTGAAGAAGACACCATGGAGATCGATGAGGAG ATGGAAGGGTCTGTGGACGAGGACTGCAACAGGTCTGATGAGGAATATGACEST: gi|76920923|gb|DV168377.1|DV168377
genomic: GGAGTGATGAGGACCTAAGTGAAGAAGACACCATGGAGATCGATGAGGAGgtgagatgaa ... tgcatggcagATGGAAGGGTCTGTGGACGAGGACTGCAACAGGTCTGATGAGGAATATGAC
EST: GGAGTGATGAGGACCTAAGTGAAGAAGACACCATGGAGATCGATGAGGAG ATGGAAGGGTCTGTGGACGAGGACTGCAACAGGTCTGATGAGGAATATGAC
genomic: GGAGTGATGAGGACCTAAGTGAAGAAGACACCATGGAGATCGATGAGGAGgtgagatgaa ... tgcatggcagATGGAAGGGTCTGTGGACGAGGACTGCAACAGGTCTGATGAGGAATATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCAGTGATGAAGAAGAGGAAGAAGAAGCTGATGTCCGTCCTAATTCAGGGAGTGATGAGGACCTAAGTGAAGAAGACACCATGGAGATCGATGAGGAGgtgagatgaagtctttatttggattgttacaggctttttcctttttttcttttatcctaaacagtaggtaaaaggattcacccatgtagttgctttctctgcactctacgctctggatccctttgtaagcatatttgtggatgtttgcatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG