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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTACATCTGCTGCCATAGATGGCCCCCTTGAACCTCCGCTAGGATCCACTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttcaactgtcatctgtcaactatttcaattccttttttttcatgctgattgaacattccctgtttatctgcattgtgtactcaatgaccatcg...

Basic information

species Zea mays
transcript GRMZM2G011173_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011173_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g05650.1 (Oryza sativa), 5'ss of exon 6
TCCTACATCTGCTGCCATAGATGGCCCCCTTGAACCTCCGCTAGGATCCACTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttcaactgtcatctgtcaactatttc--aattccttttttttcatgctgattgaacattccctgtttatc-tgcattgtgtactcaatgaccatcg--------------------------------------------------------------------------
 ||||||||||| ||||||||||| |||||||||||| ||| ||   ||||  || ||||   |||| | || || ||| |  || | || ||||||||||||  |  ||  |   | ||| |    | || |  ||    ||||||| | |  || |   |   |  | ||  ||| |  |||   |    |  ||   |                                                                            
GCCTACATCTGCAGCCATAGATGGTCCCCTTGAACCTTCGCCAGCGACCACCACTATAGTTTCTGATGCTCCTGATGAATCCCTGGTTAATTACTTCAGTgtacgttctcttcaaacttctcttgcttcttcctaaaaatatttttttccctaatgttcacattgtttc-gtcaatcgtatattcgatgtagatagattcttaaacttgtttactgggattctgaatcaatttttagtgccaaatgctaatgaaatgtccttctaaacaatgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76013658|gb|DT940828.1|DT940828
EST:     TGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: TGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|91050350|gb|EB160768.1|EB160768
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|71762637|gb|DR960574.1|DR960574
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|71419808|gb|DR804903.1|DR804903
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|71435432|gb|DR816482.1|DR816482
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGGAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|71320866|gb|DR797150.1|DR797150
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|76013659|gb|DT940829.1|DT940829
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|71313019|gb|DR793034.1|DR793034
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|78091119|gb|DV519493.1|DV519493
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|67034610|gb|CO463160.1|CO463160
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAATCATTAATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCAACACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|78091120|gb|DV519494.1|DV519494
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|74241849|gb|DT649763.1|DT649763
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|93016793|gb|EB642313.1|EB642313
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|71768256|gb|DR966193.1|DR966193
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGGAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|94477701|gb|EB706659.1|EB706659
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
EST: gi|101382184|gb|EB813148.1|EB813148
EST:     CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGT                         GTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG
genomic: CTGCTGTAGTCCTTGATACCCCCGACGAACCATTGATCAACTACTTCAGTgtatatgttc ... atatctgcagGTTGCTAGCAGCATTGGAAGCGAATCAAACGCGCCACTGTCTGGAAGAGTG