1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaacagagtttgttttcttatgtatgtcttatctgcaacctaacactccaatctttcttgctagatag
species | Zea mays |
transcript | GRMZM2G003692_T07 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|5343223|gb|AI795408.1|AI795408
genomic: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: AGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|14208321|gb|BG842006.1|BG842006
genomic: AGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|37397592|gb|CF636096.1|CF636096
genomic: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|149101270|gb|EE187382.2|EE187382
genomic: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|32856130|gb|CD995811.1|CD995811
genomic: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: AAACGGAGGGCTCTAGAAGAGAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|32840502|gb|CD980183.1|CD980183
genomic: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|40337101|gb|CK371171.1|CK371171
genomic: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|67023347|gb|CO452096.1|CO452096
genomic: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: GGCTCTANAANAAA-TGAGGGAA-GTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|32864069|gb|CF003751.1|CF003751
genomic: GGCTCTAGAAGAAAGTGA-GGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: TAGAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|71759817|gb|DR957754.1|DR957754
genomic: TAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|6095476|gb|AW120143.1|AW120143
genomic: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: GAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|6194694|gb|AW146798.1|AW146798
genomic: GAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: GAGGAAGGTCTTANG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|93015973|gb|EB641493.1|EB641493
genomic: GAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|37387558|gb|CF630976.1|CF630976
genomic: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: GAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTAEST: gi|71438969|gb|DR820019.1|DR820019
genomic: GAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
EST: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG GCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
genomic: AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaac ... tgctagatagGCTACATTGAATGTCAATGTCTTCGGAACTATTACTTTAACTCGCCTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGgtacatgaacagagtttgttttcttatgtatgtcttatctgcaacctaacactccaatctttcttgctagatag
- - - - - - - - AAGAAA