1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTCACTGTAGCTCAAGAAAACTACCCAAATCGTCTTGGAGTATTGTTTGTTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataattattgcaccctacttggcatcccatgctgctggttttgtcttgtgtgtccacttcgtctgttttatttaggcggtgaatatttttaaaat...
species | Zea mays |
transcript | GRMZM2G003108_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TATTGCACAGACATTTCTTCAA GTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATACEST: gi|211092986|gb|FK961051.1|FK961051
genomic: TATTGCACAGACATTTCTTCAAgtaagataat ... ttctatacagGTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
EST: TATTGCACAGACATTTCTTCAA GTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATACEST: gi|91875985|gb|EB405942.1|EB405942
genomic: TATTGCACAGACATTTCTTCAAgtaagataat ... ttctatacagGTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
EST: TGTCCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAA GTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATACEST: gi|71429940|gb|DR810990.1|DR810990
genomic: TGT-CCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataat ... ttctatacagGTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
EST: TTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAA GTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATACEST: gi|211095451|gb|FK961053.1|FK961053
genomic: TTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataat ... ttctatacagGTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
EST: TATTGCACAGACATTTCTTCAA GTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATACEST: gi|76932180|gb|DV172961.1|DV172961
genomic: TATTGCACAGACATTTCTTCAAgtaagataat ... ttctatacagGTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
EST: TTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAA GTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATACEST: gi|71432997|gb|DR814047.1|DR814047
genomic: TTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataat ... ttctatacagGTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
EST: TTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAA GTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATACEST: gi|110215468|gb|EC897366.1|EC897366
genomic: TTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataat ... ttctatacagGTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
EST: CACAGACATTTCTTCAA TTTTTGAAACCATCTCCAAAGCAGAAGTTACGTTTTGAGGGAGATTCATACEST: gi|50327851|gb|CO522977.1|CO522977
genomic: CACAGACATTTCTTCAAgtaagataat ... ttctatacagGTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
EST: TTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAA GTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATACEST: gi|71759550|gb|DR957487.1|DR957487
genomic: TTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataat ... ttctatacagGTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
EST: TTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAA GTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
genomic: TTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataat ... ttctatacagGTTTTGAAACCATCTACAAAGCAGAAGTTACGTTTTGAGGGAGATTCATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCACTGTAGCTCAAGAAAACTACCCAAATCGTCTTGGAGTATTGTTTGTTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataattattgcaccctacttggcatcccatgctgctggttttgtcttgtgtgtccacttcgtctgttttatttaggcggtgaatatttttaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccctac