1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAGAAATTGGCATTTATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCTgtaagatcacatcactttgcaattactattgttcttcgttatactatcttgcacagaggcacaattttctctttagttcttctgtctttgcatttgtgtt...
species | Zea mays |
transcript | GRMZM2G002276_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCT GTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATTEST: gi|71426365|gb|DR807415.1|DR807415
genomic: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCTgtaagatcac ... tctgcaacagGTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATT
EST: ATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAAATCCCCAA-GAAATTCT GTAAAGGCATTGGTAGATCCCCCACAATCAGAAAGTGACGTTACTGEST: gi|86473700|gb|DY240070.1|DY240070
genomic: ATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAA-TCCCCAAAGAAATTCTgtaagatcac ... tctgcaacagGTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTG
EST: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCT GTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATTEST: gi|71328191|gb|DR800734.1|DR800734
genomic: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCTgtaagatcac ... tctgcaacagGTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATT
EST: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCT GTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATTEST: gi|71756862|gb|DR954799.1|DR954799
genomic: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCTgtaagatcac ... tctgcaacagGTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATT
EST: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCT GTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATTEST: gi|409610|gb|T12672.1|T12672
genomic: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCTgtaagatcac ... tctgcaacagGTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATT
EST: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCT GTAAAGCCATTGGTAGATCCEST: gi|56382304|gb|CV984973.1|CV984973
genomic: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCTgtaagatcac ... tctgcaacagGTAAAGCCATTGGTAGATCC
EST: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCT GTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATTEST: gi|71299025|gb|DR785503.1|DR785503
genomic: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCTgtaagatcac ... tctgcaacagGTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATT
EST: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCT GTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATTEST: gi|211197974|gb|FL446526.1|FL446526
genomic: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCTgtaagatcac ... tctgcaacagGTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATT
EST: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCT GTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATT
genomic: TATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCTgtaagatcac ... tctgcaacagGTAAAGCCATTGGTAGATCCCCAACAATCAGAAAGTGACGTTACTGGTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAAATTGGCATTTATCTGTTCCTGGTTTCTCAAGGGAGGATAAGAATCCCCAAAGAAATTCTgtaagatcacatcactttgcaattactattgttcttcgttatactatcttgcacagaggcacaattttctctttagttcttctgtctttgcatttgtgtt
- - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA